Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01016 ATGATGAAAGTTGGGTTTGAGGTTGTTCATGGAAATTCAAACATGATCATCAACCGTTCCTCTATGCATGAAACTTGGGACTATTCAAATCTTGTTTCTTTGCCACCTCCAATCCCATCAATCCAATTTCCAATAAAGCCCTCACCAAATGAAAACCAACAAAATGAAACATGTGATTGGGTTGACAACATTGCCAAGCACCTTAATGTCAATGTTGATGAAGACTTACCACAACAAACAGCTAATGATGATGATAATAGCTTGTTATTATTGTCCAATAATAATCCTTCATCAATTCACCATCCCAACTTCAATCCAATAAGAAAAAACACTTTTTGGAAAACCCCATTTGATCCTTGCACCAATATTGACCCTCCTAGCACCAATAACTTTGGTCTTCATCATCAAGTTCAATCAAACACCTCAAATTTAGACCACAATATTATTATTAACGACAATAGTAGTAGTAGTAATAATAATAACAATAATATCCATGATCAAGGTTTGAATTTGATTACCCTTCTAATGGAATGTGCTGTGGCAATCTCTGTGGACAACCTTGTTGATGCTCAAAGGATGTTGTTGGAGCTAACACAATTGGCCTCACCTTACAAGGCATCATGTGCTGAAAGAGTTGTTGCATATTTTGCCAAAGCCATGAATAGTAGGGTCATGAATTCTTTTCTTGGTGTGTGTTCACCTTTGATTATTGATCACAAGAGCATTCATTCATCATTCCATGTTTTCAACAATGTTTCCCCTTTCATCAAATTTGCACATTTCACTTCCAACCAAGCAATTCTTGAGGCAGTGAATAGGTGCCAATGCATACACATCATTGATTTGGACATCATGCAAGGCCTTCAATGGCCAGCATTCTTCCACATTCTTGCCACAAGGTATGAGGGTCCACCCGAGGTCACAATGACCGGTATCGGCGCATCCATGGACCTCCTCGTCGAGACGGGGAAACAGCTCTCGAATTTCGCCAGACGGCTTGGAATGCCATTGAAATTCCACCCTGTCGTCGCGAAATTCGGGGAAATTGACGCATCTATGGTGCAAATTAGGTCTTGTGAGACGGTGGCGGTTCATTGGTTGCAACATTCAATGTACGATTCAACCGGGCCGGACTGGATGACCTTGAGACTAATCAAGGAATTGGAGCCAAGAATCATAACATTAGTGGAACAAGATGTAAACAATGGAGGATCATTCTTGGATAGGTTTGTTGGATCATTGCACTACTACTCAACACTATTTGATTCCCTTGGTGCATACTTGGAAATTGATGATCCTAATAGGCACAATGTTGAGCATGGAGTGCTGTCTAGGGAGATCAACAACATATTGGGCATAGGTGGACCATCAAGGAGTGGTGAGGAAAAGTTTATTAGGCAATGGAGGAATGAACTCATTTCAAGGAGCAATTGGTTTGTGCAAGTTCCAATGAGTGCTAATTCAATGGCTCAAGCACAATTGATACTTAATATGTTCTCACCACCACATGGTTATAGCCTTGCTCATGTTGATGGCACATTGAGGCTTGGTTGGAAGGATACTAGCTTGTACACTGCTTCTGCATGGACTTGTAATGCTTTTAATTAG 1608 0.4055 MMKVGFEVVHGNSNMIINRSSMHETWDYSNLVSLPPPIPSIQFPIKPSPNENQQNETCDWVDNIAKHLNVNVDEDLPQQTANDDDNSLLLLSNNNPSSIHHPNFNPIRKNTFWKTPFDPCTNIDPPSTNNFGLHHQVQSNTSNLDHNIIINDNSSSSNNNNNNIHDQGLNLITLLMECAVAISVDNLVDAQRMLLELTQLASPYKASCAERVVAYFAKAMNSRVMNSFLGVCSPLIIDHKSIHSSFHVFNNVSPFIKFAHFTSNQAILEAVNRCQCIHIIDLDIMQGLQWPAFFHILATRYEGPPEVTMTGIGASMDLLVETGKQLSNFARRLGMPLKFHPVVAKFGEIDASMVQIRSCETVAVHWLQHSMYDSTGPDWMTLRLIKELEPRIITLVEQDVNNGGSFLDRFVGSLHYYSTLFDSLGAYLEIDDPNRHNVEHGVLSREINNILGIGGPSRSGEEKFIRQWRNELISRSNWFVQVPMSANSMAQAQLILNMFSPPHGYSLAHVDGTLRLGWKDTSLYTASAWTCNAFN 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01016 535 PANTHER OS05G0485400 PROTEIN 58 531 - -
Aip02g01016 535 Pfam GRAS domain family 171 530 IPR005202 -
Aip02g01016 535 ProSiteProfiles GRAS family profile. 162 530 IPR005202 -
Aip02g01016 535 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 58 531 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01016 Aip-Chr2 18742856 18744493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01016 166 530 GRAS Transcription Factor Family AT3G54220 52.291 2.99e-127 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip02g01016 GRAS 3.6e-99 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01016 - - gmx:100775656 664.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g01016 02 18742856 18744493 Aip02g01016 02 18742856 18744493 ECH