Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g01006 ATGGAGGAAGAGCAGGATCGAATTCTGCTCAACAGTTTGGGCGTTAAGTCGGCGAATCCCGAAGACATTGAACGCCACGTCTTAGAAAAGGCGACTGCTGTTCCCGAAGCTGAAGGGAGTGTGAAGGAAGAAGATTCTAGTGTATCTGGAAATGTTGATCCATCATCTGCTACTAAAGCAGAGCTTAATCAGAAACTGAGGGCAGTGAGATTTGAAATAGATGCAGTAGCGTCTACCATTCAGCAATTGAGAAGTGATGAGAATGATGGAGAATGTGGTGGTGTTGGCGAGGACAGCCAGGAGAAAGGAGTTGCTGAAGGTGGTTCCTCCAATGATTCAAACCTTCAGTGTGTTCTTGCTGCTGATAGGCTACAGAGCCTGAAGAAAACAAAGGCTCAACTAGAGGAAAAGCTTTCGGAGTTCTGTAAGGATGATGTTTCCAAAAATAGTGACCAGGAAAAATTGATATTTGATTTAGTTAAGCAAGATAGAAGACCAAAGAAGAAATTAAAAAAAGAAGATAAAAGGCCACAGAAAAGCTTGGGGAAGCGGCAAAGGATAGTCTCCTTTAATGATGATGCTGATTTTGATGCTGTTTTGGATGCAGCCTCTGCAGGTTTTGTTGAAACAGAGAGGGATGAGTTGGTGAGAAAAGGGGTTCTAACCCCTTTTCATAAGTTGAAGGGCTTTGAGCGCCGATTTCAACAATCTGCAGCATCAAGTAGCCATAATGTATCTGAGCAAGAAAATACTGGTGATCTTGCTTCTGAAAGTGTTGAAAGGGCTGCTAGATCAATATCCGAGGCAGCAAGAGCTCGCCCAACCACCAAGCTGCTTGAATATGATGCCGTTCCAAAGCTTGATGCCCCCACCTTTCCATTTCAAAGGCTCAGGAAACCACTTAAATTACGAGACAAAGAGGAAGAGGAGAATAAAGATTCCAAGAGGAAAAGGAGGCGGCCTTTGCCTGGCAGGAAATGGACAAGGCGTGTTTCTTGTGAGGATATGCAACATGGAGATAGTGAAAATGCAAATGGTTACTTGGATACTTCTAGTTGTGAAAATTTGGAAGCTCAAGATGTTGAACTTGCCGATCATGAATCTTCTTATATAACATTAGAAGGTGGACTAAAAATCCCTGATAACATCTTTGATGCACTGTTTGACTATCAGAAGGTTGGTGTTCAATGGCTGTGGGAATTGCATTGCCAAAGAGCTGGTGGAATTATTGGTGATGAGATGGGCCTCGGTAAAACTGTCCAGGTCTTATCTTTTCTTGGTGCATTGCATTTTAGTGGCATGTACAAGCCCAGCATTATTATCTGTCCTGTTACACTTTTGAGACAGTGGAAAAGGGAAGCTAAAAAGTGGTACCCGAAATTTCATGTAGAGCTTTTACATGATTCTGTTCAGGATTCTTCTCCTAGAAAGAAGCAAGCAAATTCTGATGAATCGGACTATGAGAGTGATATTTCAAACGACAGCGATGATGAAAGAAGTGTACCATCTAGAAACACAAGAAAGTGGAAATCCCTGATAAATCGTGTTTTGAGATCAGAATCTGGTTTACTTATCACCACTTACGAGCAAATCAGAATATTGGGGGACCAGTTGCTTGACATTGAATGGGGTTATGCTGTTCTTGATGAAGGACATAGAATAAGAAATCCTAATGCTGAAGTCACCCTTGTTTGTAAACAGCTACAAACTGTGCACCGCATTATAATGACTGGTGCACCTATTCAGAACAAGCTGTCAGAACTCTGGTCATTGTTTGATTTTGTTTTTCCTGGAAGATTGGGTGTGTTGCCTGTATTTGAAGCAGAATTTGCAGTTCCTATTGCCGTTGGTGGTTATGCAAATGCTTCACCATTACAAGTATCCACAGCATACAGGTGTGCTGTGGTGCTGCGTGATTTAATCATGCCTTATCTTCTTCGACGCATGAAGGCTGATGTGAATGCGCAGCTTCCAAATAAAACTGAGCATGTCCTATTCTGCAGCCTCACATCAGAGCAAATATCTGCGTATAGAGCATTTTTGGCAAGTTCGGAAGTGGAGCAAATATTGGATGGACACAAGAATTCTCTTTCTGGAATTGATGTGATGCGCAAGATATGCAATCACCCTGACCTACTTGAAAGAGATCATGCCTCAGGTAATCCAGATTATGGAAATCCAGAACGTAGTGGGAAAATGAAGATTGTAGCTCAAGTGCTCAATGCTTGGAAGGAGCAAGGTCACCGTGTTCTTCTTTTTACTCAAACCCAACAAATGCTCGACATTCTTGAGAATTTTTTATCTACTTCTGGTCATATGTATCGGAGAATGGATGGTCTCACTCCCGTAAAACAGAGAATGGCTTTAATAGACGAATTTAATGCCTCAAATGATATATTTATTTTTATTCTAACAACCAGAGTTGGGGGTTTGGGGACAAATCTTACTGGTGCAAACAGGGTGATAATCTTTGACCCTGATTGGAATCCTTCAAATGATATGCAGGCCAGAGAGCGTGCTTGGCGTATTGGTCAGAAACGGGATGTAACAGTGTATAGGTTGATCACACGAGGAACTATAGAGGAGAAAGTTTATCACCGTCAGATTTACAAACATTTTCTTACCAATAAAATACTCAAGAACCCACAGCAGAAAAGGTTCTTTAAAGCCCGGGATATGAAAGATCTTTTCACATTGAATGTGGATGGAGAAACTGGGTCTACTGAAACATCAAATATTTTCGGCCAAATATCTGAAGAAGTAAATATGGTTGGGACACACACAAACAACCAGGAGAATAATAAATTTAGCAAGACTACTGAACCGGTTTCTGAAGATGTTGCAGCTGATAATGATGACCAATCACAGAGCGGATCTCCGAATGGAAAGGGCAAAGGGAAAGCGGAACATGGTGACGGGGTTGATGAGGAAACAAATATATTGAAGAGTCTTTTTGGTGCCAATGGGATACATAGTGCCTTGAACCATGATATGATCATGAATGCCAATGATGAGGAGAAACTGAGGCTTCAGGAGGAAGCATCCAAGGTTGCACAAAGAGCTGCAGAAGCTTTACGTCAATCACGAATGCTCCGAAGCCACGACAGCGTCTCTGTTCCTACATGGACAGGAAGGTCTGGAGCTGCTGGTGCACCAGCATCTGTTAAGCGGAAATTTGGTTCAACTGTGAATACCCAGTTGATAAATAATAACAAAGCATCTGATGGATCACCCAGCAATGGAACTAAAAAATTGAATGGATTTGCTGCTGGAGCGACGTCCGGGAAGGCATTATCTTCTGCTGAACTTTTGGCAAGAATTCGAGTTAACCAAGATAATGCTGTTGGTGCTGGCCTCGAACATCAATTTGGTACAAGCTCAAGTTCAATTAATCAAGCAAGATCTACAGATGTCAGATCTTCTAGAGCTTCTGAAAATATATCTGGCTCGCAACCTGAAGTATTAATTCGTCAGATATGTACATTTCTACAACAGCATGGCGGCAGTTCCAGTTCAGCCAGCATAGTTCAGTATTTCAAGGACAGAATACCCTCCAAAGATCTTGCTTTATTCAAGAATCTGTTAAAGGAAATAGCTACTCTGCATAAAGGGCCTAGTGGATCGAATTGGGTTCTGAAGCCAGACTACCAATAA 3654 0.419 MEEEQDRILLNSLGVKSANPEDIERHVLEKATAVPEAEGSVKEEDSSVSGNVDPSSATKAELNQKLRAVRFEIDAVASTIQQLRSDENDGECGGVGEDSQEKGVAEGGSSNDSNLQCVLAADRLQSLKKTKAQLEEKLSEFCKDDVSKNSDQEKLIFDLVKQDRRPKKKLKKEDKRPQKSLGKRQRIVSFNDDADFDAVLDAASAGFVETERDELVRKGVLTPFHKLKGFERRFQQSAASSSHNVSEQENTGDLASESVERAARSISEAARARPTTKLLEYDAVPKLDAPTFPFQRLRKPLKLRDKEEEENKDSKRKRRRPLPGRKWTRRVSCEDMQHGDSENANGYLDTSSCENLEAQDVELADHESSYITLEGGLKIPDNIFDALFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTVQVLSFLGALHFSGMYKPSIIICPVTLLRQWKREAKKWYPKFHVELLHDSVQDSSPRKKQANSDESDYESDISNDSDDERSVPSRNTRKWKSLINRVLRSESGLLITTYEQIRILGDQLLDIEWGYAVLDEGHRIRNPNAEVTLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGRLGVLPVFEAEFAVPIAVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPNKTEHVLFCSLTSEQISAYRAFLASSEVEQILDGHKNSLSGIDVMRKICNHPDLLERDHASGNPDYGNPERSGKMKIVAQVLNAWKEQGHRVLLFTQTQQMLDILENFLSTSGHMYRRMDGLTPVKQRMALIDEFNASNDIFIFILTTRVGGLGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLFTLNVDGETGSTETSNIFGQISEEVNMVGTHTNNQENNKFSKTTEPVSEDVAADNDDQSQSGSPNGKGKGKAEHGDGVDEETNILKSLFGANGIHSALNHDMIMNANDEEKLRLQEEASKVAQRAAEALRQSRMLRSHDSVSVPTWTGRSGAAGAPASVKRKFGSTVNTQLINNNKASDGSPSNGTKKLNGFAAGATSGKALSSAELLARIRVNQDNAVGAGLEHQFGTSSSSINQARSTDVRSSRASENISGSQPEVLIRQICTFLQQHGGSSSSASIVQYFKDRIPSKDLALFKNLLKEIATLHKGPSGSNWVLKPDYQ 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g01006 1217 MobiDBLite consensus disorder prediction 298 317 - -
Aip02g01006 1217 SMART ultradead3 383 606 IPR014001 -
Aip02g01006 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 650 907 IPR027417 -
Aip02g01006 1217 MobiDBLite consensus disorder prediction 1125 1146 - -
Aip02g01006 1217 MobiDBLite consensus disorder prediction 927 973 - -
Aip02g01006 1217 Pfam Helicase conserved C-terminal domain 732 844 IPR001650 -
Aip02g01006 1217 MobiDBLite consensus disorder prediction 1036 1055 - -
Aip02g01006 1217 PANTHER SNF2/RAD54 FAMILY MEMBER 247 1090 - -
Aip02g01006 1217 MobiDBLite consensus disorder prediction 44 59 - -
Aip02g01006 1217 Gene3D - 654 947 IPR027417 -
Aip02g01006 1217 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 399 598 IPR014001 -
Aip02g01006 1217 MobiDBLite consensus disorder prediction 298 348 - -
Aip02g01006 1217 CDD SF2_C_SNF 730 855 - -
Aip02g01006 1217 Coils Coil 117 144 - -
Aip02g01006 1217 Gene3D - 355 647 IPR038718 -
Aip02g01006 1217 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-6-RELATED 247 1090 - -
Aip02g01006 1217 Coils Coil 1007 1027 - -
Aip02g01006 1217 CDD DEXHc_ERCC6 387 597 - -
Aip02g01006 1217 MobiDBLite consensus disorder prediction 235 269 - -
Aip02g01006 1217 MobiDBLite consensus disorder prediction 927 941 - -
Aip02g01006 1217 Pfam SNF2-related domain 390 712 IPR000330 GO:0005524|GO:0140658
Aip02g01006 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 371 648 IPR027417 -
Aip02g01006 1217 MobiDBLite consensus disorder prediction 83 112 - -
Aip02g01006 1217 MobiDBLite consensus disorder prediction 472 503 - -
Aip02g01006 1217 SMART helicmild6 761 844 IPR001650 -
Aip02g01006 1217 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 735 894 IPR001650 -
Aip02g01006 1217 MobiDBLite consensus disorder prediction 30 59 - -
Aip02g01006 1217 MobiDBLite consensus disorder prediction 235 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g01006 Aip-Chr2 18429539 18435751 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g01006 380 897 RAD5 or RAD16-like Gene Family AT1G02670 22.987 1.01e-25 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip02g01006 SNF2_N 2.6e-60 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g01006 K10841 - gmx:100820025 1927.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g01006 02 18429539 18435751 Aip02g01006 02 18429539 18435751 ECH