Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00993 ATGGGTCTTAGAGATATTGGTGCTTCATTGCCACCTGGGTTTCGGTTCTATCCAAGTGATGAAGAATTAGTTCTTCACTATCTTTACAAGAAGATCACAAATGAGGAAGTTCTCAAGGGTACTTTGATGGAAATTGATTTGCACACTTGTGAGCCATGGCAGCTTCCTGAGGTGGCTAAGCTCAATGCAAATGAATGGTACTTCTTCAGCTTCCGTGACCGCAAATACGCCACCGGGTTTCGCACCAATCGCGCCACGACATCTGGCTATTGGAAAGCGACCGGCAAGGATCGTACGGTTCTCGATCCCCTCACCCGCGAGGTCGTAGGGATGCGGAAGACTTTGGTGTTCTACAAGAATAGAGCCCCAAATGGCATCAAAACTGGTTGGATCATGCATGAGTTTCGCTTGGAGACCCCACACATGCCACCTAAGGAGGATTGGGTTTTGTGTAGAGTGTTTCACAAGGGCAAAACAGACAATAGTGCCAAACTAAGCCCACAATTCATGTATGAGGCCACACCTTCATCCCTAACTTTGGCTTCATCATCATCATCCCCACCAACAAACCAAACAAATTGCAACAATTTGCATGTTATTGGGTATAACCAACTTCCCAATTTCTCATCATCATCATCACCAATGGCAATCCACCATAATCATCATCATCATCATCATCATCAAAACCAAAACGGTTCTTCCTCTTTGATGAATCTCCTTCAATTTTCCACTAAGGAAAATAGTACCATTACTCAACTAAGTCCCAAAGGTGGTGGTGGCGGCGGCGGCGGCGACGACGGCGGCTATGGGTTCATGTGGGACATGGATCTTGAGGAAAATAGCTTCCATGATGGTGGGGTTATTGCATCAAACTTGAACGACATGAGATTTGAGGTTGATAATAACACTATGGTTATGTTGTAG 924 0.4535 MGLRDIGASLPPGFRFYPSDEELVLHYLYKKITNEEVLKGTLMEIDLHTCEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVLDPLTREVVGMRKTLVFYKNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTDNSAKLSPQFMYEATPSSLTLASSSSSPPTNQTNCNNLHVIGYNQLPNFSSSSSPMAIHHNHHHHHHHQNQNGSSSLMNLLQFSTKENSTITQLSPKGGGGGGGGDDGGYGFMWDMDLEENSFHDGGVIASNLNDMRFEVDNNTMVML 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00993 307 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Aip02g00993 307 MobiDBLite consensus disorder prediction 211 233 - -
Aip02g00993 307 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Aip02g00993 307 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Aip02g00993 307 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 303 - -
Aip02g00993 307 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 303 - -
Aip02g00993 307 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00993 Aip-Chr2 17909017 17915435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00993 6 156 NAC Transcription Factor Family AT1G56010 58.491 1.04e-62 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Aip02g00993 NAM 1.2e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00993 - - aip:107625035 578.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00993 02 17909017 17915435 Aip02g00993 02 17909017 17915435 ECH
Aip06g01406 06 22707402 22712355 Aip02g00993 02 17909017 17915435 PCT