Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00980 ATGCCGTCTCTCCCGTCCCCGGCGGGGAGAATCCACCGCCTGGAAATGGAGAATTTCAAGTCCTACAAGGGCCACCAAGTAATCGGCCCCTTCTTCGACTTCACCGCCATCATCGGTCCCAACGGCGCCGGAAAATCGAACCTCATGGACGCAATCAGCTTCGTCCTCGGCGTCCGCACCGGCCAACTCCGTGGTGCGCAGCTGAGGGACCTCATCTACGCCTCCGACGACAAGGAGAAGGAGCAGAAGGGACGCAGGGCATTCGTTCGGCTCGTCTACCAGCTCAACAACAATAATGGTAGTAACAGTTCGGACACCGAGATCACGTTCACTCGAGCCATCACCAGCGCCGGCGCCAGCGAGTACCGAATCGACGGTAACGTTGTCACTTGGGATGTTTACAATGCCAAGCTCAAGTCCCTCGGGATACTTGTCAAGGCTCGCAATTTTCTCGTCTTTCAGGGTGATGTAGAATCCATTGCATCAAAAAACCCAAAGGAACTTACTGCCCTTCTCGAGCAAATATCTGGCTCTGATGAGCTCAAGAGGGACTACGAGCAATTTGAAGAAGAAAAGGGTGAAGCTGAAGAAAAATCAGCACTTGTCTATCAAAAGAAAAAGACAGTGGTGATGGAGAGAAAACAGAAGAAAGAACAAAAAGAAGAGGCAGAGAAACATCTCCGACTGCAAGAACAACTGAAATCTATAAAGAAAGAACATTTCCTGTGGCAGTTGTTCAATATAGAAAAGGATGTTGCTAAAACAAACGAGGAGCTTGACGATGATGAAAAACGCCGTAAAGAAGTTATGGAAGAACTAGAAAATTTTGAACGTGAGGCTAGTAAAAAGAAAAAGGAGCAAGCCAAATATCTGAAAGAGATTGCATTGCGTGAAAAAAAAATTACGGAGAAAAGTAGCAGACTTGACAAGAGTCAACCTGAGCTCCTCAAGCTGCGGGAGGAAATTAATCGTATAAATTCAAAAATTAAGAAAAGCAATAAGGAGCTTGAAAAGAAAAGAGCAGAACGGAGGAGACATGCTAATGATATAGAAGAGCTACAGAAGGGGATACAGGATCTTACAGCAAAAATGGCAGCCCTACAAGAAAGGAGTCGAGATGTTCGTAATCAGCTACAGTTAGACGGTGATGACTTGGAAAAATATTTTCAAATCAAGGAAGAAATTGGAATGAAAACTGCAGAGCTAAGAGAGAAGAAAGAGCTTCTAGATAGGCAGCAGCATGCTGATAGTGAAGCTAAAAAAAATTTGGAAGAAAATCTTCAACAGTTGGAAAACAGGGTGTCTGAGTTGGATTTGCAAGAAACACAGATGAAGACAAGGCTTAAAAAAATTCTTGGTGGTTCTGAAGGAAACAAGAACGAGCTTGAGAAACTGAAAAAGGAACTGCGTGTGATGGAGGAGAAACATCGTGATTCTAGGACTAAACATAAAAGCTTGGAGCTAAAAATTAGTGAAATAGAAAATCAGCTACGTGAATTGAAGGCTGATAGATATGAAAATGAAAGAGATGCTAGGCTGTCTCAGGCTGTGGAGGCTCTGAAACGCCTATTTCAAGGGGTCCATGGACGCATGACTGATCTTTGCAGGCCAACACAGAAGAAGTATAACCTTGCTGTTACTGTTGCTATGGGTAAATTTATGGATGCAGTTGTAGTTGAAGATGAAAAGACTGGAAAGGAATGCATCAAGTATTTAAAAGATCAAAGGCTTCCTCCTCAGACATTCATTCCTCTGCAATCAGTTCGAGTGAAGCCAATCATGGAAAGATTGCGCACATTAGGGGGTACAGCGAAACTGGTTTTTGATGTGATTCAATATCCTTTTCAACCATTTGATCCTTCCTTGGAGAAGGCAATTCTCTTTGCTGTGGGAAATACTCTTGTTTGTGATGATCTTGAGGAGGCCAAAGTTTTAGGCTGGAGTGGTGAGAGGTTTAAAGTTGTGACTGTGGACGGAATTCTGCTGACAAAATCCGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGGTCAAAACAGTGGGATGACAAGAAAATTGAAGGACTTAACAAAAAGAAAGAGCAGTATGAATCAGATTTGGAAAAACTAGGATCAATAAGAGATATGCACCTCAAAGAGTCTGAAGCTGCTGGCAAAATTAGTGGACTCGAGAAGAAAATCCACTACGCTGATATTGAGGAGAAAAGCATCAAAGACAAACTTAGAAATTTGAGCCACGAAAAAAAGAACATCAAAGAAGAAATTGGTCGTATGAGTCCGGAACTCCAGAAGTTAAGAGATGCTGTTGATAAGAGGAAATCAGAAATAAGTGAGCTCGAGAAGGGCATAAATGAAAAAACAGATGAGGCTTACAAAAAGTTTAGCAAGTCTGTTGGGGTTGCAAATATCCGTGAGTATGAAGAAAACCGACTCAAAGATGCTCAGAGTGTTGCAGAAGAGAGGCTAGAACTGAGTAGCCAAATTTCAAAATTAAAATATCAATTGGAATATGAGCAAAATAGGGACATGAGTTCAAGAATTCAAGAGCTAGAATCATCCCTGGATACTTTACAGAATAATTTAAAACGGGCACAGAACAAAGAAGCTGAAACAAAGTTGGCTACCGAGAATGCTACCGAAGAGATTGATCAGCTTAAGCAAGAAATAAAAGAGTGGAAATCAAAGTCGGAAGATTGTGAGAAAGAAATCCAAGAATGGAAAAAGCAGGCTTCGTCAGCCACAACAAACATATCCAAACTTAATCGTCTGATAAACACCAAGGAAGCACATATTGAGCAGATGATTGTACAAAAGCAGGAAATATTAGATAAGTGTGACTTTGAACAGATTAGCCTTCCAACCATATCTGATCCAATGGATACTGGCACCTCAACCCCAAGTCCAGTTTTTGATTTTGATCAGCTAAGCAGGGCATTGAAAGATAAGCACTCTGACAGGGATAAAATTGAGGTGGAATTTAAACAAAAAATGGATTCCTTGGTATCTGAAATTGAAAGAACAGCACCAAATTTGAAGGCATTGGACCAATATGAGGCTCTTCTTGAAAAGGAAAAAGCTGTAACTGAAGAGTTTGAATTGGTGAGGAAAGAAGAGAAGGAGAAAGCTGATAGATTCAATTCAGTTAAGCAAAGGAGGTATGAATTGTTCATGGATGCTTTCAACCATATATCTGGCAATATAGATAAAATTTACAAACAACTCACAAAGAGTAGCACACATCCACTGGGTGGAACAGCATATTTAAACTTGGAAAATGAAGATGATCCTTTCCTACACGGCATCAAGTACACTGCTATGCCCCCAACAAAGCGCTTCCGTGATATGGAGCAGCTATCTGGTGGGGAGAAAACTGTTGCTGCTCTTGCTTTGTTATTTTCCATCCACAGCTACAAGCCTTCACCATTTTTCATATTGGATGAAGTCGATGCTGCATTGGATAACTTGAATGTCGCTAAGGTTGCTGGATTTATCCGTGCGAAGTCTTGTGAAGGAGCAAGGGTTAGCCAGGATGCTGATGGGGGCAACGGTTTCCAGAGTATTGTGATATCACTGAAAGACAGCTTTTATGACAAAGCTGAAGCCTTAGTTGGTGTTTACAGGGACTCTGAAAGAGGTTGTTCGAGGACTCTCACGTTTGATCTGACTAAATACCGTGAGTCATAG 3690 0.4192 MPSLPSPAGRIHRLEMENFKSYKGHQVIGPFFDFTAIIGPNGAGKSNLMDAISFVLGVRTGQLRGAQLRDLIYASDDKEKEQKGRRAFVRLVYQLNNNNGSNSSDTEITFTRAITSAGASEYRIDGNVVTWDVYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTALLEQISGSDELKRDYEQFEEEKGEAEEKSALVYQKKKTVVMERKQKKEQKEEAEKHLRLQEQLKSIKKEHFLWQLFNIEKDVAKTNEELDDDEKRRKEVMEELENFEREASKKKKEQAKYLKEIALREKKITEKSSRLDKSQPELLKLREEINRINSKIKKSNKELEKKRAERRRHANDIEELQKGIQDLTAKMAALQERSRDVRNQLQLDGDDLEKYFQIKEEIGMKTAELREKKELLDRQQHADSEAKKNLEENLQQLENRVSELDLQETQMKTRLKKILGGSEGNKNELEKLKKELRVMEEKHRDSRTKHKSLELKISEIENQLRELKADRYENERDARLSQAVEALKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKFMDAVVVEDEKTGKECIKYLKDQRLPPQTFIPLQSVRVKPIMERLRTLGGTAKLVFDVIQYPFQPFDPSLEKAILFAVGNTLVCDDLEEAKVLGWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKIEGLNKKKEQYESDLEKLGSIRDMHLKESEAAGKISGLEKKIHYADIEEKSIKDKLRNLSHEKKNIKEEIGRMSPELQKLRDAVDKRKSEISELEKGINEKTDEAYKKFSKSVGVANIREYEENRLKDAQSVAEERLELSSQISKLKYQLEYEQNRDMSSRIQELESSLDTLQNNLKRAQNKEAETKLATENATEEIDQLKQEIKEWKSKSEDCEKEIQEWKKQASSATTNISKLNRLINTKEAHIEQMIVQKQEILDKCDFEQISLPTISDPMDTGTSTPSPVFDFDQLSRALKDKHSDRDKIEVEFKQKMDSLVSEIERTAPNLKALDQYEALLEKEKAVTEEFELVRKEEKEKADRFNSVKQRRYELFMDAFNHISGNIDKIYKQLTKSSTHPLGGTAYLNLENEDDPFLHGIKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYKPSPFFILDEVDAALDNLNVAKVAGFIRAKSCEGARVSQDADGGNGFQSIVISLKDSFYDKAEALVGVYRDSERGCSRTLTFDLTKYRES 1229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00980 1229 Coils Coil 315 377 - -
Aip02g00980 1229 Coils Coil 413 447 - -
Aip02g00980 1229 Coils Coil 178 198 - -
Aip02g00980 1229 Coils Coil 455 510 - -
Aip02g00980 1229 Coils Coil 245 293 - -
Aip02g00980 1229 Gene3D - 504 585 - -
Aip02g00980 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 283 IPR027417 -
Aip02g00980 1229 CDD ABC_SMC1_euk 11 165 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Aip02g00980 1229 SMART SMC_hinge_2 525 646 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Aip02g00980 1229 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 10 1228 - -
Aip02g00980 1229 CDD ABC_SMC1_euk 1108 1223 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Aip02g00980 1229 Coils Coil 764 791 - -
Aip02g00980 1229 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 856 1212 IPR027417 -
Aip02g00980 1229 SUPERFAMILY Smc hinge domain 489 695 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Aip02g00980 1229 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 10 1228 - -
Aip02g00980 1229 Gene3D - 586 673 - -
Aip02g00980 1229 Coils Coil 736 756 - -
Aip02g00980 1229 Pfam RecF/RecN/SMC N terminal domain 11 1210 IPR003395 -
Aip02g00980 1229 Coils Coil 688 708 - -
Aip02g00980 1229 Gene3D - 810 951 - -
Aip02g00980 1229 Coils Coil 842 925 - -
Aip02g00980 1229 Coils Coil 206 239 - -
Aip02g00980 1229 Pfam SMC proteins Flexible Hinge Domain 525 643 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Aip02g00980 1229 Gene3D - 10 205 IPR027417 -
Aip02g00980 1229 PIRSF SMC 9 1226 IPR024704 GO:0005524|GO:0016887
Aip02g00980 1229 Gene3D - 952 1228 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00980 Aip-Chr2 17311425 17323250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00980 9 288 Structural Maintenance of Chromosomes family AT5G15920 24.211 1.56e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00980 K06636 - gmx:100785315 1882.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00980 02 17311425 17323250 Aip02g00980 02 17311425 17323250 ECH