Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00976 ATGGGTAGAGCTCCATGCTGTGAGAAACTAGGGTTGAAGAAGGGGCCATGGACCCCTGAAGAAGATCAAATCCTCATCAATTATATCAACACAAATGGTCACAATAATTGGCGTGCCCTTCCCAAACAAGCTGGGTTATTGAGGTGTGGAAAGAGTTGCAGATTAAGATGGATAAATTATTTGAGGCCAGATATCAAACGGGGCAACTTTACCAACGAAGAAGAAGAGACAATACTCAAGTTGCATGAAATGTTGGGAAACAGATGGTCAGCAATTGCAGCAAGATTGCCGGGTCGCACAGATAACGAGATAAAAAATGTTTGGCACACCCACTTGAAGAAAAGGTTGCCCCCACAAGAAAACAACAACATTAAGAGCACAAAGAAGCCACGTCCAAAACAAAAGAAGAAGTTGGAAATTACCAAAAAGTCCAACAAAACCTCATCAAAACAAAAACAAGAAAAAGAAGAAGAGGAACCCATCAAAATTGGGGATAGGACAATGATGTCTCCTAATACACAGTGTTCAAGCAGTAGTAGCATTAATAATACTACTAATAATAATAATAACAATGATGGTGTGTCGATGAACAATTCAAGTGGTGAATCGATTAATAATGATGATGATGGTAATAAGGATGATAATTTGGCATTGGACGAGGAGTTTTGGTCTGAAGTTTTGTCATCGGATAATTCGTATGATGAGGATGCAAGAAAATTTGAGGACATTGAATTTGGTGACTTAGATTTGTTCCACTTTCCGTTGTTATCTTCATCAGCATCAAGTGTTGCATGTGATGGCATGGATTCTTGGTATGATTTTTGCACAAAATCTTTGGAATTGCCACAATTGTGA 855 0.386 MGRAPCCEKLGLKKGPWTPEEDQILINYINTNGHNNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEETILKLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPPQENNNIKSTKKPRPKQKKKLEITKKSNKTSSKQKQEKEEEEPIKIGDRTMMSPNTQCSSSSSINNTTNNNNNNDGVSMNNSSGESINNDDDGNKDDNLALDEEFWSEVLSSDNSYDEDARKFEDIEFGDLDLFHFPLLSSSASSVACDGMDSWYDFCTKSLELPQL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00976 284 CDD SANT 69 112 IPR001005 -
Aip02g00976 284 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 244 - -
Aip02g00976 284 PANTHER MYB-RELATED PROTEIN ZM1 1 244 - -
Aip02g00976 284 SMART sant 66 114 IPR001005 -
Aip02g00976 284 SMART sant 13 63 IPR001005 -
Aip02g00976 284 CDD SANT 16 61 IPR001005 -
Aip02g00976 284 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Aip02g00976 284 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Aip02g00976 284 MobiDBLite consensus disorder prediction 167 205 - -
Aip02g00976 284 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Aip02g00976 284 Gene3D - 11 67 - -
Aip02g00976 284 Gene3D - 69 116 - -
Aip02g00976 284 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Aip02g00976 284 MobiDBLite consensus disorder prediction 141 164 - -
Aip02g00976 284 MobiDBLite consensus disorder prediction 110 215 - -
Aip02g00976 284 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Aip02g00976 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Aip02g00976 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00976 Aip-Chr2 17269556 17273334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00976 1 284 MYB Transcription Factor Family AT2G31180 48.944 4.56e-81 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip02g00976 Myb_DNA-binding 1.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00976 K09422 - gmx:100775603 285.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00976 02 17269556 17273334 Aip02g00976 02 17269556 17273334 ECH