Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00961 ATGAGCACTACTACGCCTCCTTTCTTTGAGATCCCAGATTGGGACATGTCCCATCATGATGATAACAATGTTTCACACACTTTCTGCTTCACAACCAACAATAATGGATTATTCACAACCCATGTTGTTAATCACCCTTCTTTCATTAATAACACTTCATCACTTTCCTTTGATGATGATATCATTGACTTCTCCATTGATTATTCACAATCACAATCACCAACAACCACAGAGAACATCAAGAAGAAGAAGAAGCTTGAAGATGATGAAGAAGAACAAGTTGATGGTGACAAGGGAATTAGAAGAAATTACATAGGAGTTCGGAAAAGGCCATGGGGGAAATTTGCAGCAGAAATAAGAGACAGAACAAGGAATGGAAGAAGGGTTTGGCTTGGAACATTCGAGAGTGCAGAAGATGCTGCTTTGGCTTATGATCAAGCTGCATTCTCCATGAGAGGCTACAACGCTGTTCTCAACTTTCCATTCAAAAGGGTCAAAGATTCTTTGCAAGGAATGATCATGGATTCTGATTCTTGTTCTTGTTCTTCACCTGCACTTGCACTCAAAGAGAGGAATTGGATCCAAAGGAAGTTGTCAAAGACTAACAAGAAAAAGGAATCATCAGAGAAATCTTCATCATCATCAACAACTAATAATAGTAATGTGATGGTGTTTGAGGATTTGGGGGTTGAATATCTAGAACAACTCCTTAGCATTTCAGATCAAAATACCACCACAACTTAA 744 0.3858 MSTTTPPFFEIPDWDMSHHDDNNVSHTFCFTTNNNGLFTTHVVNHPSFINNTSSLSFDDDIIDFSIDYSQSQSPTTTENIKKKKKLEDDEEEQVDGDKGIRRNYIGVRKRPWGKFAAEIRDRTRNGRRVWLGTFESAEDAALAYDQAAFSMRGYNAVLNFPFKRVKDSLQGMIMDSDSCSCSSPALALKERNWIQRKLSKTNKKKESSEKSSSSSTTNNSNVMVFEDLGVEYLEQLLSISDQNTTTT 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00961 247 SMART rav1_2 103 167 IPR001471 GO:0003700|GO:0006355
Aip02g00961 247 SUPERFAMILY DNA-binding domain 104 162 IPR016177 GO:0003677
Aip02g00961 247 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B-LIKE 22 242 - -
Aip02g00961 247 ProSiteProfiles AP2/ERF domain profile. 103 161 IPR001471 GO:0003700|GO:0006355
Aip02g00961 247 MobiDBLite consensus disorder prediction 198 219 - -
Aip02g00961 247 Pfam AP2 domain 103 153 IPR001471 GO:0003700|GO:0006355
Aip02g00961 247 PRINTS Ethylene responsive element binding protein signature 104 115 IPR001471 GO:0003700|GO:0006355
Aip02g00961 247 PRINTS Ethylene responsive element binding protein signature 127 143 IPR001471 GO:0003700|GO:0006355
Aip02g00961 247 PANTHER DNA-BINDING DOMAIN 22 242 IPR044808 GO:0003700|GO:0009873
Aip02g00961 247 Gene3D AP2/ERF domain 102 163 IPR036955 GO:0003700|GO:0006355
Aip02g00961 247 CDD AP2 103 161 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00961 Aip-Chr2 16819492 16820235 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00961 102 245 AP2-EREBP Transcription Factor Family AT3G23240 56.552 5.79e-46 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip02g00961 AP2 7.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00961 K14516 - gmx:100812017 170.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00961 02 16819492 16820235 Aip06g01130 06 16457378 16457917 ECH
Aip02g00961 02 16819492 16820235 Aip02g00961 02 16819492 16820235 ECH