Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00960 ATGACTTCCCCTAATTTCTTTGAGATCCAGGATTGGAAAACATCATCTTCACCAAATTTTTGCTTCCAAAAATTTTCCAACAACAATGTTGATGATTCTCCTTCTTTTGATATGATTGACTTCTCCATGCCTTCACAACAAGTCCCAAAAATAGGTAACAACAACAAATACAAGGAGAAAAATGTGAAGAACAAGAAGCATGAAGAAGAATATGAAGATGTTCATCATGGTGAAAAAGGAAGGTACATAGGTGTAAGAAAAAGGCCATGGGGGAAATTCGCAGCCGAAATTCGAGACACAACAAGGAATGGAACAAGGGTTTGGCTTGGAACCTTTGATTGTGCTGAAGATGCTGCTTTGGCTTATGATGAAGCTGCATTTGCCATGAGAGGTTACAATGCTGTTCTCAATTTTCCAGTTCAAAAGGTCAAAGATTCCTTGCAAGGAATTGAGTATAGTTGTGGCAACAACAACAACAAAGGGTATTCACCAGCACTTGCACTCAAAGAGAGAAACTACATGAGAAGAAAACTGTCATCATCAAAGGAAAATGATTCTACTCAAAATTCAAAGTGTAAAGGGAAAAGTGAAGAATCATCATCATCATCATCATCAAATAGTAGTGTGATGGTGTTAGAGGACTTGGGAGTTGAATATCTTGAGCAACTCCTAAGTATTTCGGATAATAATAATAATAATAATCAAGTTGAAAGTCCTAGTTATTACTTCAAATAA 735 0.3633 MTSPNFFEIQDWKTSSSPNFCFQKFSNNNVDDSPSFDMIDFSMPSQQVPKIGNNNKYKEKNVKNKKHEEEYEDVHHGEKGRYIGVRKRPWGKFAAEIRDTTRNGTRVWLGTFDCAEDAALAYDEAAFAMRGYNAVLNFPVQKVKDSLQGIEYSCGNNNNKGYSPALALKERNYMRRKLSSSKENDSTQNSKCKGKSEESSSSSSSNSSVMVLEDLGVEYLEQLLSISDNNNNNNQVESPSYYFK 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00960 244 MobiDBLite consensus disorder prediction 193 208 - -
Aip02g00960 244 CDD AP2 81 141 IPR001471 GO:0003700|GO:0006355
Aip02g00960 244 SUPERFAMILY DNA-binding domain 81 140 IPR016177 GO:0003677
Aip02g00960 244 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Aip02g00960 244 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Aip02g00960 244 PANTHER DNA-BINDING DOMAIN 28 226 IPR044808 GO:0003700|GO:0009873
Aip02g00960 244 MobiDBLite consensus disorder prediction 176 208 - -
Aip02g00960 244 MobiDBLite consensus disorder prediction 176 192 - -
Aip02g00960 244 Gene3D AP2/ERF domain 80 141 IPR036955 GO:0003700|GO:0006355
Aip02g00960 244 PANTHER AP2 DOMAIN CONTAINING PROTEIN, EXPRESSED 28 226 - -
Aip02g00960 244 ProSiteProfiles AP2/ERF domain profile. 81 139 IPR001471 GO:0003700|GO:0006355
Aip02g00960 244 SMART rav1_2 81 145 IPR001471 GO:0003700|GO:0006355
Aip02g00960 244 Pfam AP2 domain 81 131 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00960 Aip-Chr2 16800675 16801409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00960 82 232 AP2-EREBP Transcription Factor Family AT3G23240 50.331 7.85e-46 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip02g00960 AP2 3.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00960 K14516 - gmx:100812017 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00960 02 16800675 16801409 Aip02g00960 02 16800675 16801409 ECH
Aip06g01130 06 16457378 16457917 Aip02g00960 02 16800675 16801409 PCT