Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00953 ATGTTTCCGGAGGCGTGGCGCGGGCAACTTCCTCCCAGTTTGATCCCTCGGCCAGCTCCGGAAGTCGCTGTTACCGGCGCTGTCCCAGCTGCTCACCTCGCCTGCGTCGCTGGCCTCGTCCGTGTCGGTGTGGCCGTTCAGAAGGCGCATAGAGGAAGTTTCTCCTTCCTTCTCTTTCTCTGTGATCGAAGGAAGTTCCGCCGTCGCCGACATCGTTGCTCCATTCGACCTGTCCTCCTGCATCGCTACTCCGTTCAACTCCTGATTGGCTTTCATAAGGGTTCTTCCTTACCAAATAAAGTCAGTGGAACCGATTCTGATGAAGTGGCAAAATCTGCTGAAAACCAGCAAACAGAGCAAGTGTGCAGCTTCTTCAGGAAACCAATTAATAAGAAGAATATAAGGAAACGTGCTATTGATAGTGAAGATGAGGGTGATGATTCAAAAAATGAAAACTCTTTGTTGCATGCTCAGAAGAAGGCTCCAAAGCCTGACAATAAGTTGTACTTTTCAACTGGCCCCTCGAAAAGCTCTGTTTCTACTGAACCAAGTGAAGAATCTGAAAAAACCGGTTTCCATTTCGAGTCTTCGAAAGAGATTCAAGTTCAACATGATAGCAAAGCAACAGCAACTCTAGAGACAGAGACCGACTTCTCCAGAGATGCTCGTGCAATCCGTGAACGTGCTCTTAAGCAAGCAGAAGAGAGTTTGAAGGGGAAAGGCACAAGTTCTGAGGATGGCAAACTATATAAGGGAATGAACAGTTACAAAGATTACAAGGCCGGCTTCCGGAGAGAGCAAACAATTGCTAGCGAAAAGGCTGGTGGTTCACATGGTCCTCTCAGGGCTTCGGCTCATATAAGAGTTTCAGCGAGATTTGATTATCAGCCTGATATATGTAAGGATTACAAGGAGACTGGTTACTGTGGGTATGGTGATTCCTGTAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGATGGCAGTTGGAGAAGGAATGGGATGAAGCTGAGAAGGCAAGGAGGATGAGACTGGCTGCGGGTGAAGATGCGGACGAGGAAAGTGCTGATTTAGCTGATAGTGACGATGAAGATGCATTGCCATTTGCATGTTTTATTTGTAGGAAGCCTTTTGCGGATCCTGTTGTAACCAAGTGCAAGCACTACTTCTGCGAGCATTGCGCCTTAAAGCATCATGCAAAGAACAAGAAGTGTTTTGTCTGCAACCAACCAACTCTCGGCATTTTCAATGTTGCCCATGAGATACGAAAGAAGATGGCTGAGGATAAAGATAAATGA 1299 0.4681 MFPEAWRGQLPPSLIPRPAPEVAVTGAVPAAHLACVAGLVRVGVAVQKAHRGSFSFLLFLCDRRKFRRRRHRCSIRPVLLHRYSVQLLIGFHKGSSLPNKVSGTDSDEVAKSAENQQTEQVCSFFRKPINKKNIRKRAIDSEDEGDDSKNENSLLHAQKKAPKPDNKLYFSTGPSKSSVSTEPSEESEKTGFHFESSKEIQVQHDSKATATLETETDFSRDARAIRERALKQAEESLKGKGTSSEDGKLYKGMNSYKDYKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEAEKARRMRLAAGEDADEESADLADSDDEDALPFACFICRKPFADPVVTKCKHYFCEHCALKHHAKNKKCFVCNQPTLGIFNVAHEIRKKMAEDKDK 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00953 432 Gene3D - 292 326 - -
Aip02g00953 432 SUPERFAMILY CCCH zinc finger 293 325 IPR036855 GO:0046872
Aip02g00953 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 369 428 IPR013083 -
Aip02g00953 432 SUPERFAMILY RING/U-box 370 413 - -
Aip02g00953 432 Pfam Zinc finger, C3HC4 type (RING finger) 370 412 - -
Aip02g00953 432 MobiDBLite consensus disorder prediction 136 163 - -
Aip02g00953 432 ProSitePatterns Zinc finger RING-type signature. 386 395 IPR017907 -
Aip02g00953 432 PANTHER ZINC FINGER PROTEIN 183 111 430 IPR039971 -
Aip02g00953 432 MobiDBLite consensus disorder prediction 182 202 - -
Aip02g00953 432 MobiDBLite consensus disorder prediction 136 220 - -
Aip02g00953 432 ProSiteProfiles Zinc finger C3H1-type profile. 294 322 IPR000571 GO:0046872
Aip02g00953 432 SMART ring_2 371 408 IPR001841 -
Aip02g00953 432 ProSiteProfiles Zinc finger RING-type profile. 371 409 IPR001841 -
Aip02g00953 432 CDD RING-HC_RNF113A_B 369 409 - -
Aip02g00953 432 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 295 320 IPR000571 GO:0046872
Aip02g00953 432 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 1-LIKE 111 430 - -
Aip02g00953 432 SMART c3hfinal6 294 321 IPR000571 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00953 112 432 C2H2 Transcription Factor Family AT1G01350 71.028 5.77e-169 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip02g00953 zf-C3HC4_3 8.4e-09 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00953 K13127 - gmx:100787434 550.051