Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00949 ATGACCAATAATAGTAGTAATAATAATAATCCTTTCTTGTTCCATAACACAGATTTTTGGGATGTTGATTCGGACACTGCTTCCTTTGGGTTCCAATCATTGAAAACCAAGAATGATTTTGATGAGCCATTTGAGGATTCTTTATCATTTGAGATGATTGACTTCTCATTATCATCATCATCAGAATCAAGAACCCTAAAGAAGGAGAAGAATCGTGAAAAGGAAGAGGAAGATGATAAAAGAAGAGGAAGAAGAAGTTACATAGGAGTTCGAAAGAGGCCATGGGGAAAATTCGCAGCGGAAATTCGAGACACAACAAGAAATGGAAGAAGGGTTTGGCTTGGAACATTCGAGAGTGCTGAAGAAGCTGCTTTGGCTTATGATCAAGCTGCATACTCCATGAGAGGCTACTCTGCTCTTCTCAACTTTTCTTTCCAAAGGGTCAAAGATTCTTTGCAAGGAATCATCATGGATTCTGATTCCAACAACAAACACAAACCCTTTTCTTCTTCTTCTTCTTCACCTGCACTTGCACTCAAAGAGAGGAACTCCCTCCAAAGAAAATTGTCATCATGGTCCTCAAAGTCTAAAAACAAGAACAAAAGCAAGGAATCATCATCATCATCATCATCTAAGGAATCTTCATCAACTACTACTGCTAATAGTAATGGTGGTGTCATGGTTTTAGAGGATTTGGGAGTTGAATATCTTGAGCATCTACTAACCATTTCAGAATCTCATCATCAAAACACAAGCCCtaactactattgcaacaacaatgaagtcttgttccactcgtcagCACCCTCTATTGCGATTCACAGCTCTACTAACTACCGCCGCGCCTTCCTTATCGATTTGCCACCCCCAAGATCATTGCAGCGCCCTCCCCCGAGCCTTCCCTCGCGCTTCGCAATGCCGCTGATCACCGCATCGCCCTCTCCCTCGCAATTCGTTGCGCACAAGACCACCACAGCTCCCCCCTCCCGATTTACAGCACCGCCGACTGCCGCAACGCCCTCCTTTTCGCTATTCGTTGCACTTAGGACCACCTCATCGCCCTCCCCTCATGATTCCCACCGCAACCCACCACTGTAG 1098 0.4271 MTNNSSNNNNPFLFHNTDFWDVDSDTASFGFQSLKTKNDFDEPFEDSLSFEMIDFSLSSSSESRTLKKEKNREKEEEDDKRRGRRSYIGVRKRPWGKFAAEIRDTTRNGRRVWLGTFESAEEAALAYDQAAYSMRGYSALLNFSFQRVKDSLQGIIMDSDSNNKHKPFSSSSSSPALALKERNSLQRKLSSWSSKSKNKNKSKESSSSSSSKESSSTTTANSNGGVMVLEDLGVEYLEHLLTISESHHQNTSPNYYCNNNEVLFHSSAPSIAIHSSTNYRRAFLIDLPPPRSLQRPPPSLPSRFAMPLITASPSPSQFVAHKTTTAPPSRFTAPPTAATPSFSLFVALRTTSSPSPHDSHRNPPL 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00949 365 MobiDBLite consensus disorder prediction 64 85 - -
Aip02g00949 365 MobiDBLite consensus disorder prediction 318 337 - -
Aip02g00949 365 PANTHER DNA-BINDING DOMAIN 43 243 IPR044808 GO:0003700|GO:0009873
Aip02g00949 365 CDD AP2 87 143 IPR001471 GO:0003700|GO:0006355
Aip02g00949 365 PANTHER AP2 DOMAIN CONTAINING PROTEIN, EXPRESSED 43 243 - -
Aip02g00949 365 SUPERFAMILY DNA-binding domain 87 145 IPR016177 GO:0003677
Aip02g00949 365 MobiDBLite consensus disorder prediction 203 224 - -
Aip02g00949 365 MobiDBLite consensus disorder prediction 158 196 - -
Aip02g00949 365 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
Aip02g00949 365 Pfam AP2 domain 87 136 IPR001471 GO:0003700|GO:0006355
Aip02g00949 365 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
Aip02g00949 365 PRINTS Ethylene responsive element binding protein signature 110 126 IPR001471 GO:0003700|GO:0006355
Aip02g00949 365 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Aip02g00949 365 MobiDBLite consensus disorder prediction 158 224 - -
Aip02g00949 365 Gene3D AP2/ERF domain 86 146 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00949 Aip-Chr2 16440353 16445917 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00949 81 245 AP2-EREBP Transcription Factor Family AT3G23240 51.515 2.04e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip02g00949 AP2 4.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00949 K14516 - gmx:100782036 179.104