Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00909 ATGGAAGGGAAGAACTATTATATGAAGAACAAGAACACTAGTAGTACTACTCATAATAACAATAGCTTTGAGGAGCATTATTCATGGGAAACTTCTTCATCAACACGGCCAACAAGAAGCTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAATCTGCTCAAGCTTTGGGTGGACACATGAATGTTCATAGAAGGGATAGGGCAAGATTGAGATCTTCATGGATTTCTAATCACACCCCTAAACCTAACCCTAACCCTAATCCTAACCCTACAACAACTCTTGTTTCTTCATCATCATCTCCTTTATCTAATGATCCTATCAATAATTGTTCACATATTTCTCCAATTTATAGCCCTAATTTTTGTCTCAATTTGTCGTCGTCTTCTTCTTCACCCTCCCCGAATTTAGCTTCCATCACAAGAAGTGAAGATAAAAAACCTAGACTCATCATATCTACTCCACAAGTTCTTCCTCTTGTGATGAATAGTCCTCAAAACATGGTGATGATGATGAGTAAGAAAAGCAAAAGTGGTGATTTTGTTGGTGGGGTTGATGATGATGAGAATTACAAGGATAATGTTTTCAAGCACAAGAATGAGCATAACAACATTACCTTGGAGTTGGGAATAGGATTGGTTAAGCACAAAGAGCAGAAGTTGGATTTGGAGCTTAGACTCTAG 681 0.3789 MEGKNYYMKNKNTSSTTHNNNSFEEHYSWETSSSTRPTRSYACSFCKREFKSAQALGGHMNVHRRDRARLRSSWISNHTPKPNPNPNPNPTTTLVSSSSSPLSNDPINNCSHISPIYSPNFCLNLSSSSSSPSPNLASITRSEDKKPRLIISTPQVLPLVMNSPQNMVMMMSKKSKSGDFVGGVDDDENYKDNVFKHKNEHNNITLELGIGLVKHKEQKLDLELRL 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00909 226 Pfam C2H2-type zinc finger 41 65 - -
Aip02g00909 226 Gene3D Classic Zinc Finger 10 83 - -
Aip02g00909 226 MobiDBLite consensus disorder prediction 7 22 - -
Aip02g00909 226 MobiDBLite consensus disorder prediction 74 103 - -
Aip02g00909 226 ProSitePatterns Zinc finger C2H2 type domain signature. 43 63 IPR013087 -
Aip02g00909 226 PANTHER OS07G0101800 PROTEIN 9 226 - -
Aip02g00909 226 SMART c2h2final6 41 63 IPR013087 -
Aip02g00909 226 MobiDBLite consensus disorder prediction 1 22 - -
Aip02g00909 226 ProSiteProfiles Zinc finger C2H2 type domain profile. 41 68 IPR013087 -
Aip02g00909 226 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 9 226 - -
Aip02g00909 226 SUPERFAMILY beta-beta-alpha zinc fingers 38 67 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00909 Aip-Chr2 15325670 15326350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00909 1 226 C2H2 Transcription Factor Family AT3G23130 32.618 2.12e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip02g00909 zf-C2H2_6 6.5e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00909 - - ahf:112721869 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip06g00131 06 1272332 1272949 Aip02g00909 02 15325670 15326350 PCT