Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00827 ATGTTCCCAGCAGTTATGTCCAATTCTACTTCTTTGTCTGAAGAAGCAAGTGTCTCTTCTGGCACAAGAATTCAAGACTTTGGTGCTACCTTAAACCATGTTGTTTCAACCATTTCTCCTCATCAACAACAACAACAACAACAACCTCCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAATCCAGACCCAGATGCTGAAGTGATAGCTTTATCACCAAAGACACTATTAGCAACAAATAGGTTTGTGTGTGAGATCTGTAACAAAGGGTTCCAAAGGGATCAAAACCTTCAGCTTCATAGAAGAGGGCACAATCTTCCATGGAAGCTGAAGCAAAGGAACAACAAAGAAGTGAAGAAGAGAGCATATGTTTGCCCTGAACCTTCATGTGTCCATCACAATCCTTCAAGGGCTCTTGGGGACCTCACTGGAATCAAGAAGCATTATTGTAGAAAACATGGTGAGAAGAAGTGGAAATGTGACAAGTGCTCTAAGATCTATGCTGTTCAATCTGATTGGAAGGCTCATTCTAAAACTTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTCTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCTGAAGAGAGTGCAAGAGTTTCAGCAAACCAGCATCAATTAATCACAACACCTTCAAATCCATTACTCCAATCCCTCTTCCTTTTCCCAACCCAAAACAACTTCATCAATCCATGGGACCCACAATCATCTCAAGAAAACCCTAACCCTAATAATAATAATAATAATACACTTCTTCATAACATCAACATTAAGCCTGAAGTTCAAAGCTTTCACATCCCAAATTCCGATAATGCCCCTCCATTGTTCCTTCACCAAAACCCCAGCAAGAATAACACCATCATGATGACGTCACCCTTCAGGAACAACCCGCACGTGCGCATGCAACCACAATCCAACAGTGCTAATGCTGCTGCTGCTGCCACGTCAGCACATCTCTCAGCCACTGCACTCCTCCAGAAGGCCGCGACCGTGGGCGCGGCCGCCATCACGGGCCCTAATGCCTCACTTGGAGTTGGCCAGCACGTGACTCGTCACGTGACTGAGCTCGGCGACATGACTCAGCTTGACTCGGTTCATTTCATGAACAACATGGGAGTGGGAGGGTTTAACAACAACAACAACAACACAAGGAGCCTCAAGAGTAGTGATGATCTTACAAGAGACTTTCTAGGGTTAACCGGAGATAACAACGGCGGAAGAGGCGGCGGCTGTGACGGAGGAAATGCTGGCGCAGTTGACGTTAGCATGAATATGAAGGACATGCTAACGTACACCGGGAACATAGATTACCAACAACAACACCACCATCATCTTCGACACCCGTTGTTTAAGTCACCACAACAAGGTTTTGGATTTCTTGGAACAACAACTGCCCCAGAATCATGGGGCAATTGTTGA 1470 0.4503 MFPAVMSNSTSLSEEASVSSGTRIQDFGATLNHVVSTISPHQQQQQQQPPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARVSANQHQLITTPSNPLLQSLFLFPTQNNFINPWDPQSSQENPNPNNNNNNTLLHNINIKPEVQSFHIPNSDNAPPLFLHQNPSKNNTIMMTSPFRNNPHVRMQPQSNSANAAAAATSAHLSATALLQKAATVGAAAITGPNASLGVGQHVTRHVTELGDMTQLDSVHFMNNMGVGGFNNNNNNTRSLKSSDDLTRDFLGLTGDNNGGRGGGCDGGNAGAVDVSMNMKDMLTYTGNIDYQQQHHHHLRHPLFKSPQQGFGFLGTTTAPESWGNC 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00827 489 MobiDBLite consensus disorder prediction 38 53 - -
Aip02g00827 489 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Aip02g00827 489 Gene3D Classic Zinc Finger 152 223 - -
Aip02g00827 489 Pfam Zinc finger, C2H2 type 83 105 IPR013087 -
Aip02g00827 489 SUPERFAMILY beta-beta-alpha zinc fingers 82 179 IPR036236 -
Aip02g00827 489 SMART c2h2final6 83 105 IPR013087 -
Aip02g00827 489 SMART c2h2final6 159 179 IPR013087 -
Aip02g00827 489 SMART c2h2final6 124 154 IPR013087 -
Aip02g00827 489 MobiDBLite consensus disorder prediction 38 67 - -
Aip02g00827 489 Gene3D Classic Zinc Finger 62 131 - -
Aip02g00827 489 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Aip02g00827 489 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 465 - -
Aip02g00827 489 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00827 Aip-Chr2 13110640 13121954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00827 15 454 IDZ Gene Family AT4G02670 48.344 2.00e-126 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip02g00827 zf-C2H2 0.0049 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00827 K25870 - gmx:100780056 576.244