Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00806 ATGGAGAAGTATGAGATTCTTCAACAGATTGGCAAAGGTTCCTTTGGTTCTGCTCTTCTTGTTAGGCACAGACATGAAAACAGAAAGTATGTACTCAAGAAGATCAAACTTGCTCGCCAAACTGACAGAACTCGTAGATCTGCTCATCAAGAGATGGAACTCGTCTCTAAAGTTCGAAATCCATTTATCGTGGAATATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCATCATCGGCTATTGTGAAGGCGGAGATATGGCTGAAGCTATAAGAAAGTCTAATGGTATTCATTTTTCCGAAGAGAAGCTTTGTAAGTGGCTTGTTCAACTGCTGATGGCACTTGATTACTTGCATACGAATCATATTCTGCACCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGTCTAGGTGACTTTGGTCTTGCTAAAATGTTGACATGTGATGATCTTGCTTCCTCGGTTGTCGGGACTCCAAGTTATATGTGTCCGGAGCTTCTTGCTGATATACCTTATGGCTCTAAGTCAGATATCTGGTCTTTAGGATGCTGTGTTTATGAAATGGCTGCACATAAGCCAGCTTTCAAAGCTCTTGATATGCAAACATTGATTAATAAAATAAACAAGTCTTTAGTGGCTCCACTACCAACCATGTATTCCAGTCCATTTCGAGGGCTTGTCAAGAGTATGCTGCGGAAAAATCCAGAGCTTAGGCCAAGTGCTGCAGAGTTACTAAATCATCCACATCTTCAGCCTTATATTCACAAAATTCACCTGAAACTCAATACCCCAAGAAGAAGTACTTTTCCCTTCCAGTGGCATGATTCGAGTTACTTAAGGAGAAACCGCTTTTTCGAGCCAGAATCTGTTTCTACTATTTCAGACAGACACAAAAGATTATCCTTTAGCAATGACAGAGCTTTGAATCCTAGTATTTCTGGAACTGAAGTAGGTTCTCTCTGTTCTGCTCAAAGAGCACAAGGATCCTTCACTTATTCAAAAGAGAGATTGTATGATCTTTCTGTTGGTTGTGTCCGGGAAGAGTTGAATGCTAACAAGTCGAAAGCAGCAAAGTTCTCAGCTTTCGACAGGACACCAAGATCGCAAGCAGGGAAGATTTCCACCCCGAGACGGCCGATAATACCGTCGATATCACATACTAGCTCCAAGCGTGATTCACTTCCAGCATCTCCGGCCGCAAAGTTCGCCCCACCAACTCGTCGAGCATCTCTTCCACTTCTTACACCTTCAACTGGAGTCATGGCAACAGCTACCCCTTACAGAGCCAGCATTGGCCTTCTAAGAAGCCTGGACTCACCAGATATTTCTGTCAATGCACCACGAATCGACAAGATGGCAGAGTTCCCTCTAGCATCCTGCGAGGGCAATCATTTCTTCCCCGTTCGTGGCACCTCATCAACGTCGGCTCATTGCTCGTCTAGCTCCCCCGGTAGCGCCGAATGCTCATTCACAAAAGACAAGTGTACAGTCCAAGTTGTGGACAAGGCCAGTGTCCCTACTATTACCACTGGTGTTAATAGCACTCCAGCTCCGGTCTCTCACGGCAGTGAATGCTCTGAGCCCGGGGCAACTATTGTTTCAAGCCATTCCTCGGCTGACTCTCGTCAGCGCAGGTTCGACACCTCGTCGTACCAGCAGCGCGCGGAGGCGTTGGAAGGGTTGCTGGAGTTCAGTGCAAGGCTCCTACAGCAACAGAGGTTTGAAGAGCTTGGTGTGTTGTTGAAACCATTTGGACCTGAGAAGGTTTCACCAAGGGAAACAGCTATTTGGTTGACTAAGAGCTTCAAAGAAACTGCGGCATAA 1848 0.4502 MEKYEILQQIGKGSFGSALLVRHRHENRKYVLKKIKLARQTDRTRRSAHQEMELVSKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIRKSNGIHFSEEKLCKWLVQLLMALDYLHTNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQTLINKINKSLVAPLPTMYSSPFRGLVKSMLRKNPELRPSAAELLNHPHLQPYIHKIHLKLNTPRRSTFPFQWHDSSYLRRNRFFEPESVSTISDRHKRLSFSNDRALNPSISGTEVGSLCSAQRAQGSFTYSKERLYDLSVGCVREELNANKSKAAKFSAFDRTPRSQAGKISTPRRPIIPSISHTSSKRDSLPASPAAKFAPPTRRASLPLLTPSTGVMATATPYRASIGLLRSLDSPDISVNAPRIDKMAEFPLASCEGNHFFPVRGTSSTSAHCSSSSPGSAECSFTKDKCTVQVVDKASVPTITTGVNSTPAPVSHGSECSEPGATIVSSHSSADSRQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKETAA 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00806 615 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip02g00806 615 CDD STKc_Nek 3 258 - -
Aip02g00806 615 MobiDBLite consensus disorder prediction 521 553 - -
Aip02g00806 615 PANTHER SERINE/THREONINE-KINASE NEK4 1 604 - -
Aip02g00806 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Aip02g00806 615 MobiDBLite consensus disorder prediction 370 411 - -
Aip02g00806 615 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 604 - -
Aip02g00806 615 Gene3D Transferase(Phosphotransferase) domain 1 84 276 - -
Aip02g00806 615 MobiDBLite consensus disorder prediction 388 402 - -
Aip02g00806 615 MobiDBLite consensus disorder prediction 521 547 - -
Aip02g00806 615 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip02g00806 615 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Aip02g00806 615 SUPERFAMILY Protein kinase-like (PK-like) 1 318 IPR011009 -
Aip02g00806 615 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Aip02g00806 615 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00806 Aip-Chr2 12805122 12810829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00806 10 259 MAP Kinase Kinase Kinase AT1G53570 30.196 7.18e-36 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Aip02g00806 Pkinase 1.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00806 K08857 - gmx:100810347 959.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00806 02 12805122 12810829 Aip02g00806 02 12805122 12810829 ECH
Aip06g00181 06 1850162 1854099 Aip02g00806 02 12805122 12810829 PCT