Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00785 ATGAGGTCCTTCACCTATACGATTTTGGGCTCTGATGGTCAGTTTCCAACTCGTGGGGAGGAGGAGGTCCAAACGGGTATAGTGAAGGCAACCATGGATCATGAAAAACTCTGGCCACTAAACAAGTTTCAATGCTCTATACCAAGCCTTTCTCTAGCACAtcaaataatctgcatcctcctcagcccgaagGAACTTCTGATTGCTTTTTCTTTGAAAATGATGGCTACTCCAACTAAACCAATGGCCGTAATGTTGTCTGAATCTTTGGAACACAAGGGAAAGGATATCACTGAATTAAATGGTAACATACTTCAATCCCCTATAAGTCAACAGCCCCATAGCTCCTCTGATGGTTCAGTAGCTATTCTTTGGGACATCGAAAACTGTCCTGTTCCAAGTGATGTCCGCCCTGAAGACGTAGCAGGAAATATAAGGATGGCGTTGCAAGTGCATCCACTAATTGAAGGAACTGTTATGGTATTTTCTGCTTATGGTGACTTCAACGCTTTCCCTAAGCGACTTAGAGAGGGATGTCTAAGAACTGGTGTTAATCTCATTGATGTTCCTAATGGGAGAAAAGATGCTGCTGATAAAGCAATCTTGGTTGACATGCTTTTATTTGCTCTTGACAACCCTCCCCCATCATCTATTATGCTAATATCTGGAGACGTTGACTTTGCCCGAGCACTTCACATTCTTGGACAACGGGGATACACTATAATTCTTGTCATCCCTTCTCGGATGGGTGTTTCATCTGCTTTATGCAATGCCGGAATGTTTGTCTGGGATTGGCCTAACGTTGCTCGTGGAGAAGGATTTGTTCCCCCTCGTGGAGGTTCAGTTGAGGTTGCTGGATATTTGATGGGGTGCCATATTAATGACAACTTGGAGGGACAAAATGAGGAAGAAGCAATAGTTTATAGAGGGATGTCACAGAGATTATATAACTCAAGGGATTTCTCTATGGTTTCACAATCTCTATCTGAATACAATTATACCGCATCGAACATGGCTGGCTTACTGACAACTATGAGATCACACAGCCTTCTTCCACCTGGGATGATTGATGTTTCAGGAATATCTATGCCTTCTAGTGACAATAATGAAGGCCAGCTTTGGGGCCCTATGTCTAGCGATTTAAATGTTCTCAAAGGCCAGTTGGTAAAGTTGCTTGAACTTTCTGGAGGGTGCCTGCCTCTGGCTCGAGTTCCAACAGAGTATCAGAAAGCTTATGGAAGAACTCTTTATGTATCTGATTATGGAGCAATTAAGTTAGTCAATCTTTTCAAGAAGATGGGTGATACAATGGCAGTGGAAGGGAAAGGTCAACGTAAATTTGTGTATCTCAGAAACTTCAAGAAAGACAAGAAAGGAAAGGGGCTTCCAGAGGAGAATACGAATACTGTCGCCGGTGGTGGCTCTTCAGATGAGTTCTCAGATGAAGAAAGACTAGTCATGGAAGAACATGATGAGAGCAGTCAAAGGAGAGCAGCTATCAATGACCGTGCTCTTGAGCAGTTCAAGTTCGAGCTTCAAGAGATTCTAGTCAGCTACTCGTGTCGAATATTCCTAGGTTGTTTTGAGGATATATACCAACAAAGGTACAAGAGACAATTGGAATATGAGAAACTTGGAGTGAACAAGTTGGAGGATTTGTTTGAGAAAGTCAATGATATTGTAGTATTGGTTGAGGAAGCAGGAAGCAAGAGGAAGTTCCTTGATCCAGTGGGGGGTTAG 1740 0.4201 MRSFTYTILGSDGQFPTRGEEEVQTGIVKATMDHEKLWPLNKFQCSIPSLSLAHQIICILLSPKELLIAFSLKMMATPTKPMAVMLSESLEHKGKDITELNGNILQSPISQQPHSSSDGSVAILWDIENCPVPSDVRPEDVAGNIRMALQVHPLIEGTVMVFSAYGDFNAFPKRLREGCLRTGVNLIDVPNGRKDAADKAILVDMLLFALDNPPPSSIMLISGDVDFARALHILGQRGYTIILVIPSRMGVSSALCNAGMFVWDWPNVARGEGFVPPRGGSVEVAGYLMGCHINDNLEGQNEEEAIVYRGMSQRLYNSRDFSMVSQSLSEYNYTASNMAGLLTTMRSHSLLPPGMIDVSGISMPSSDNNEGQLWGPMSSDLNVLKGQLVKLLELSGGCLPLARVPTEYQKAYGRTLYVSDYGAIKLVNLFKKMGDTMAVEGKGQRKFVYLRNFKKDKKGKGLPEENTNTVAGGGSSDEFSDEERLVMEEHDESSQRRAAINDRALEQFKFELQEILVSYSCRIFLGCFEDIYQQRYKRQLEYEKLGVNKLEDLFEKVNDIVVLVEEAGSKRKFLDPVGG 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00785 579 MobiDBLite consensus disorder prediction 459 478 - -
Aip02g00785 579 PANTHER LIMKAIN B LKAP 88 574 IPR024768 GO:0005777|GO:0010468|GO:1903231
Aip02g00785 579 ProSiteProfiles OST-type HTH domain profile. 380 452 IPR025605 -
Aip02g00785 579 Gene3D - 500 574 IPR041966 -
Aip02g00785 579 Gene3D - 378 449 IPR041966 -
Aip02g00785 579 ProSiteProfiles OST-type HTH domain profile. 504 578 IPR025605 -
Aip02g00785 579 CDD LOTUS 505 571 - -
Aip02g00785 579 CDD PIN_limkain_b1_N_like 121 246 - -
Aip02g00785 579 Gene3D - 113 265 - -
Aip02g00785 579 Pfam OST-HTH/LOTUS domain 382 447 IPR025605 -
Aip02g00785 579 Pfam OST-HTH/LOTUS domain 505 569 IPR025605 -
Aip02g00785 579 Pfam NYN domain 121 258 IPR021139 GO:0004540
Aip02g00785 579 PANTHER - 88 574 - -
Aip02g00785 579 CDD LOTUS 381 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00785 Aip-Chr2 12291500 12297727 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00785 119 271 C2H2 Transcription Factor Family AT5G61190 44.444 6.52e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00785 - - ahf:112715639 946.806