Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00687 ATGGCTATTATAACAACAACAAAGAGAACTGAACGGTTCCGTCGAACAACACCACCAACATGCAAGTATTGGCTAGCTGGGAGATGCAACAGAAATCCTTGTCAATTTTCACATAGCTTACCAACCTCGCCATCCAATGTATACTATAATGCCAATACGACATATAAGCATTCGAAAAAGCCCGATTCGTCCGTTGAGAAGATGGCCAGTTCCTCTGCTAAGAAGGCAATAAATTGCGCACCCAAGGCCTTCAAGAAGCCAGAAAATTGTGCACTAAAGGCTGTTGAGTGCAGACCAGAAGCAGAAGCTATATCTGTTGAGAAGCCAAGCAAGTGTGAACAAAAGGCAGAAGCTATATCTTCCGTTGAGAAGCCAAGCAAGTGTGAACAAAAGGCTGTATTGATTGAAAAGACTGCAGACGTGGAAGATGTGGCCACTGTTGCTAAGGCTTGTGTGGATAAATCACGTAGTATTTGCAAATATTGGATGACTGACAATTGTGTGGACGGTGACTTGTGTCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTTCTACACTTGCAAAGCTTCATGAACACAAGGAGGCAATCACTGGCATTGCACTGCCGGCTGGTTCAAACAAACTTATTTCTGGTAGCACTGACGGCACAGTTCGGGCATGGGACTGCAACACTGGCCGTTGTGTTAACATGATCCATCTTAATTCTCAAGTTACCTCACTCATATCTGAGGGCCCATGGATTTTTGCCGGTGTGAAAAATGCTGTGAAGGCATGGAATATTCAGACGGGTGCAGATGTTACTCTTGATGGACCTAAAGGGCAAGTCCTTTCTTTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATGCAGCTTTGAGACTCCTTTCAAACTGGTTGCAACACTAAGTGGTCATAGTAAACCAGTGGTTTGTCTTGCTATTGGATGTCACAAGATGCTTTATTCTGGATCCATGGACCATAGCATTAAGGTAGTTTGGGACCTTGATACATTCCAGTGCACAATGACACTTAACGGGCATACCGACGTTGTCACATCACTTATTTGCTGGGACAATTACTTGTTATCGGGTTCATCTGATTGCACAGTCAATGTTTGGGTGTGCACTGAGGAGGGAACTCTAGAAGTGGCATACACTCACACTCACCAAATTGCTGTTCTTGGACTGTATGGGATGACTGATGTAGAGGCGAAGCCAATATTGTTCTGCTCGTGCAAAGATAATTCAGTTCGTATGTATGAGTTGCCGACGTTTCTAGAGAGAGGTCGACTATTTACAAGACAAGAAGTTCGATCCTTTCAGATAGGCCCTGGCGGACTCTTCTTTACTGGAGATGAGACTGGTTTGCTGaatgtgtggaaatggttagaagagtag 1431 0.4333 MAIITTTKRTERFRRTTPPTCKYWLAGRCNRNPCQFSHSLPTSPSNVYYNANTTYKHSKKPDSSVEKMASSSAKKAINCAPKAFKKPENCALKAVECRPEAEAISVEKPSKCEQKAEAISSVEKPSKCEQKAVLIEKTADVEDVATVAKACVDKSRSICKYWMTDNCVDGDLCQNLHSWFYGDGFSTLAKLHEHKEAITGIALPAGSNKLISGSTDGTVRAWDCNTGRCVNMIHLNSQVTSLISEGPWIFAGVKNAVKAWNIQTGADVTLDGPKGQVLSLNVGNDILLAGAEDGVIYAWRCSFETPFKLVATLSGHSKPVVCLAIGCHKMLYSGSMDHSIKVVWDLDTFQCTMTLNGHTDVVTSLICWDNYLLSGSSDCTVNVWVCTEEGTLEVAYTHTHQIAVLGLYGMTDVEAKPILFCSCKDNSVRMYELPTFLERGRLFTRQEVRSFQIGPGGLFFTGDETGLLNVWKWLEE 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00687 476 SUPERFAMILY WD40 repeat-like 178 472 IPR036322 GO:0005515
Aip02g00687 476 Pfam WD domain, G-beta repeat 188 223 IPR001680 GO:0005515
Aip02g00687 476 Pfam WD domain, G-beta repeat 308 345 IPR001680 GO:0005515
Aip02g00687 476 Pfam WD domain, G-beta repeat 350 384 IPR001680 GO:0005515
Aip02g00687 476 Gene3D - 172 245 IPR015943 GO:0005515
Aip02g00687 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 191 232 IPR001680 GO:0005515
Aip02g00687 476 ProSiteProfiles Zinc finger C3H1-type profile. 15 41 IPR000571 GO:0046872
Aip02g00687 476 SMART c3hfinal6 154 179 IPR000571 GO:0046872
Aip02g00687 476 SMART c3hfinal6 15 40 IPR000571 GO:0046872
Aip02g00687 476 SMART WD40_4 391 432 IPR001680 GO:0005515
Aip02g00687 476 SMART WD40_4 184 223 IPR001680 GO:0005515
Aip02g00687 476 SMART WD40_4 306 344 IPR001680 GO:0005515
Aip02g00687 476 SMART WD40_4 435 472 IPR001680 GO:0005515
Aip02g00687 476 SMART WD40_4 348 385 IPR001680 GO:0005515
Aip02g00687 476 SMART WD40_4 263 300 IPR001680 GO:0005515
Aip02g00687 476 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 191 223 - -
Aip02g00687 476 ProSiteProfiles Zinc finger C3H1-type profile. 153 180 IPR000571 GO:0046872
Aip02g00687 476 Gene3D - 246 476 IPR015943 GO:0005515
Aip02g00687 476 PANTHER - 14 476 IPR044715 -
Aip02g00687 476 ProSiteProfiles Trp-Asp (WD) repeats profile. 355 384 IPR001680 GO:0005515
Aip02g00687 476 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 14 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00687 Aip-Chr2 10173265 10216114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00687 249 436 Miscellaneous Gene Families AT5G08390 26.531 6.35e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip02g00687 WD40 0.0016 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00687 - - ahf:112726849 775.778