Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00677 ATGAGTTTTGGAGGGTTTCTAGACAACAATTCCGGTGGCGGCGACGACGGTGGCGGTGGCGGCGGTGTGAGAAACATAGTTGAAATTCCATATAACAACGGTGGTGGTGGCACTACCAAGAACAACATCATCAACAACGATAATAATAGAACAACAATGCCCTCTGGTGCAATCTCACAGCCTCGCCTTTTAACAACTACTCCAACTTTGGCCAAATCAATGTTCAACTCACCTGGCCTCTCTCTAGCACTTCAAACGAATCTTGATGGACAAGGGGATGTGAATAACAACAACATTATGGGGAGTGAGAACAACAACAATAATTATGAGGGAAGTAATGGAGGATTGAGAAGGAGCAGAGAAGAAGAACATGAAAGCAGATCTGGAAGTGATAACATGGATGGTGCCTCCGGCGATGAACAAGATGCTGCCGACAACAATAATCCCAAAAGGAAAAAACGTTATCACCGACATACTCCTCAGCAAATACAAGAGCTTGAATCGTTGTTTAAGGAGTGTCCCCATCCTGACGAGAAACAAAGGCTAGAACTTAGTAAAAGGCTTTGCTTGGAAACAAGGCAGGTGAAGTTTTGGTTCCAAAATCGGAGAACCCAAATGAAGACTCAATTGGAGCGCCATGAGAACACACTCCTAAGGCAAGAGAATGACAAGCTTAGAGCTGAGAACATGTCAATTAGAGATGCAATGAGGAACCCCATGTGTTCAAATTGTGGTGGTCCTGCCATAATTGGTGAGCTTTCTCTTGAGGAACAACATCTTAGGATTGAGAATGCAAGACTAAAGGATGAATTAGACCGGGTTTGTGCCCTCGCCGGCAAGTTCTTGGGCCGGCCCATTTCGTCCATGGGCGGGCCCCACCCGTTGCCAAATTCAAGTTTGGAGCTTGGGGTTGGCAACAATAACAATGGCTATGGTTGTAACTTGAGCATAAATGTGCCTAATAGCTTGCCTTTGGGGCCGGAATTTGGGGTGAATTTGTCTAGTCCTTTGGGTATGGTTTCCGGGCCGGCGATCACTCGGCCGCAGCCGAGCGCGGTGGTTGGCGGATTCGATAGGTCAATGGAGAGGTCAATGTTGTTGGAGCTTGGTTTGGCTGCCATGGATGAGTTGGTGAAGATGGCACAAAGTTGTGAGCCTCTTTGGATAAGGAGTTTGGAAATTGGAGGAAGGGAAGTACTTAACCATGAGGAGTATATTAGGACATTCCCTAATCCTTGCATTGCTTTAAGGACTAATTCCTTTGTCTCTGAGGCTTCTAGGGAAACTGGCCTTGTCATCATAAATAGCTTGGCTCTTGTTGAGACTTTAATGGATGCGGCAGAGATGTTTCCTTGTATGATTGCAAGAACCTCAACCACTGAAGTGATATCGAATGGAATAAACGGTAGCAGAAATGGAGCACTTCAACTAATGCATGCGGAGCTTCAAGTTCTATCGCCATTGGTACCAGTTAGAGAAGTGAATTTCCTTCGATTTTGCAAGCAACACGCAGAAGGGGTGTGGGCAGTGGTGGATGTCTCCATTGATGCTATCAGAGAAACTTCTTCTGCCGGTGCCCCAACTTTTGTTAATTGCAGAAGACTCCCTTCTGGCTGTATAGTACAAGATATGCCTAATGGTTACTCCAAGGTGACATGGGTGGAACATGCCGAATACGAGGAAAGGGAAGTTCATCAGTTATATAGAGCCTTGTTGAGCTCTGGCATGGCCTTCGGCGCCCAGCGGTGGATCGCCACCCTACAGCGCCAGTGCGAGTGCCTCGCCATCCTCATGTCTTCTACTCAACCTTCTAGAGACCACTCAGCAATAACTGCAAGTGGTAGGCGCAGCATGCTGAAGCTGGCACAGAGGATGACCAACAACTTCTGTGCCGGAGTGTGCGCGCGATCCTGGGGAGCCACCCGGGATCGTCCTCAGCGCTGCCACGTCAGTGTGGCTCCCAGTCTCGCCGCAAAGGCTGTTCGACTTCCTCCGCGACGAGAGGACCATGGCAACTGCGTCTCCCTCCTTAGAGCTGGTGCAATAAATTCAAATCAAAGTAGCATGTTGATACTTCAAGAGACATGCATAGATGCTGCTGGCTCGCTTGTGGTGTACGCGCCGGTGGATATTCCGGCGATGCACGTGGTAATGAACGGTGGTGATTCTGCTTACGTGGCATTATTGCCTTCTGGGTTTGCGATTGTTCCTGATGGGCCTGGGCCTCGTGGGGCCCAAAATGGTGGCGCCGAAGCCAATGGCGGCGATGACCTTGGTGGTGGGGCGCGTGGGAGTGGGTCCCTTTTGACGGTGGCATTTCAGATTCTTGTGAATAGTCTCCCTACGGCCAAGCTCACGGTAGAGTCGGTGGAAACTGTGAACAACCTCATTTCATGCACAGTTCAAAAGATAAAAGCAGCACTTCGATGTGAAAGTTGA 2439 0.4887 MSFGGFLDNNSGGGDDGGGGGGVRNIVEIPYNNGGGGTTKNNIINNDNNRTTMPSGAISQPRLLTTTPTLAKSMFNSPGLSLALQTNLDGQGDVNNNNIMGSENNNNNYEGSNGGLRRSREEEHESRSGSDNMDGASGDEQDAADNNNPKRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPMCSNCGGPAIIGELSLEEQHLRIENARLKDELDRVCALAGKFLGRPISSMGGPHPLPNSSLELGVGNNNNGYGCNLSINVPNSLPLGPEFGVNLSSPLGMVSGPAITRPQPSAVVGGFDRSMERSMLLELGLAAMDELVKMAQSCEPLWIRSLEIGGREVLNHEEYIRTFPNPCIALRTNSFVSEASRETGLVIINSLALVETLMDAAEMFPCMIARTSTTEVISNGINGSRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDAIRETSSAGAPTFVNCRRLPSGCIVQDMPNGYSKVTWVEHAEYEEREVHQLYRALLSSGMAFGAQRWIATLQRQCECLAILMSSTQPSRDHSAITASGRRSMLKLAQRMTNNFCAGVCARSWGATRDRPQRCHVSVAPSLAAKAVRLPPRREDHGNCVSLLRAGAINSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGPRGAQNGGAEANGGDDLGGGARGSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALRCES 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00677 812 Coils Coil 250 270 - -
Aip02g00677 812 ProSiteProfiles 'Homeobox' domain profile. 149 209 IPR001356 GO:0003677
Aip02g00677 812 CDD homeodomain 151 209 IPR001356 GO:0003677
Aip02g00677 812 MobiDBLite consensus disorder prediction 93 159 - -
Aip02g00677 812 SUPERFAMILY Bet v1-like 667 805 - -
Aip02g00677 812 SMART HOX_1 150 213 IPR001356 GO:0003677
Aip02g00677 812 MobiDBLite consensus disorder prediction 33 60 - -
Aip02g00677 812 Gene3D - 138 225 - -
Aip02g00677 812 ProSiteProfiles START domain profile. 359 596 IPR002913 GO:0008289
Aip02g00677 812 CDD START_ArGLABRA2_like 363 592 - -
Aip02g00677 812 SUPERFAMILY Homeodomain-like 134 209 IPR009057 -
Aip02g00677 812 Coils Coil 203 235 - -
Aip02g00677 812 MobiDBLite consensus disorder prediction 1 21 - -
Aip02g00677 812 ProSitePatterns 'Homeobox' domain signature. 184 207 IPR017970 GO:0000981|GO:0006355
Aip02g00677 812 Pfam Homeodomain 152 207 IPR001356 GO:0003677
Aip02g00677 812 SUPERFAMILY Bet v1-like 360 593 - -
Aip02g00677 812 MobiDBLite consensus disorder prediction 115 130 - -
Aip02g00677 812 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 105 637 - -
Aip02g00677 812 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 667 809 - -
Aip02g00677 812 MobiDBLite consensus disorder prediction 93 114 - -
Aip02g00677 812 Pfam START domain 371 593 IPR002913 GO:0008289
Aip02g00677 812 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 105 637 IPR042160 -
Aip02g00677 812 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 667 809 IPR042160 -
Aip02g00677 812 SMART START_1 368 593 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00677 Aip-Chr2 9986417 9996119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00677 1 812 Homeobox Transcription Factor Family AT3G61150 57.011 0.0 857
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip02g00677 START 7.6e-51 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00677 K09338 - gmx:100818372 1073.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00677 02 9986417 9996119 Aip02g00677 02 9986417 9996119 ECH
Aip02g00677 02 9986417 9996119 Aip04g02690 04 116039467 116046852 ECH