Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00656 ATGGAAGCAGCTACAGCAAGTACTACTTCCTCTCAGTCTCGCCAGAGAAAGCTGAAGAGAAAGCGCGCCGCCGCGTTGGCGAGTGACCCCCAACTCGACCGACTTAACTCGCTGCCTTGGAACCCTTCGTTTCCACGAAACAATGACGAAGATGATAACAATAACGAAAACGATCCCTTTGCTATGCTCGCTACTGGCTCCAACGAGCTCGAAGGAGGTTTCCTCTCGCTCGAGGAGATCGACGAGGCTGATTACGGTTTTTCCATTCCTGAACCTCAAATTAACGAGAAGAAGAACCAGAAGAAGAAGCATAAACTCGACGAGAATGTGATAGAAGAGAAGAAGAAGAAGGAAGAAGAGGAAGGAGATGATGGAGTTGGCGGTGGCGGCGGCGGTGGTAGCGGTGAGGTTGAAGTGAAGAAGGAAAAGAAAAATGACAAGAAGAAGAAGAAGAAGAAAAAGAAGACAAAGAAGGATAAGAAGAAGGAGGAGGAAAAGGAGGAGGAAGCGGTTACCGAAAACCAGAATGTTGAGAAGCCAGATACTGGTAGTCTAGATACTGATGTGAAGGATGATGATGATGATGTTGGGGAAGAAGACTTTGATGAAACTGAATTTTATGCATGGAATGAGTTGAGGCTTCATCCTTTGCTGATGAAAGCAATTTACAAGCTTGGATCTGGTAAAACACTTGCATTTGGTTTGCCCATTTTGCAACGTATTTTGGAGGAACGGGAGAAGGCTACAAAGATGGAGGAAGAAAGGGGTGAAGAGCCAGAAAAATATGCTCCTACAGGAATTTTGAGGGCTCTAATTGTTGCCCCAACCAGAGAGCTTGCTATTCAGGTAACTGATCATCTGAAAGCAGTAGCTAAGTATATTAATGTTAGGGTGACCCCTATTGTTGGGGGAATTTTAGCCGAAAAGCAGGAGAGACTTTTAAAATCAAGACCTGAGATTGTTGTTGGAACTCCAGGGAGGTTGTGGGAACTTATGTCAAGTGGAGAAAAGCATCTAGTTGAGTTACATTCATTGTCTTTCTTTGTGCTTGATGAGGCTGATCGAATGGTACAAAACGGTCATTTTAAGGAGTTGCAATCAATAATTGACATGCTTCCCATGCCAAATATCTCCGCCGAAGATAATTCTCAACATGCACAAAATTGTGTTACAGTTTCAAGCTACCAAAGAAAGAAAAGACAAACTCTTGTGTTTTCAGCTACTGTTGCACTTTCTGCTGATTTTCGCAAGAAGCTTAAGCGCGGTTTAGTAAAACAAAAACAATCATTCACAGAGGAACTGAATTCTATTGAAACTCTTTCTGAACGAGCTGGAATGAGATCCAATGCTGCAATTATTGATCTTACCAACCCATCGATATTGGCAGCCAAGCTTGAGGAATCATTTATTGAATGCAGGGAAGAAGATAAAGATGCCTACTTGTATTATATTTTGACTGTCCATGGACAAGGTCGCACCATAGTTTTCTGTACATCAATTGCAGCTTTGCGCCATATTTCTTCCATACTGCGGATTCTTGGCATTGATGTTTGGACTCTGCATGCACAAATGCAGCAGCGAGCACGTTTAAAGGCCATGGATCGTTTTCGTGAAAGTGAAAATGGCATACTAGTTGCTACGGATGTTGCTGCAAGGGGTCTTGATATTCCCGGTGTTAGAACTGTTGTCCACTATCAACTTCCGCATTCAGCAGAGGTTTATGTGCATAGAAGTGGAAGAACAGCTAGAGCTTCTGCTGAAGGTTGTAGCATTGCTTTAGTCTCACCAAAAGAAACGGCAAAGTTTGCTTCGCTGCTCAAATCATTTTCTAAGGACAATTTTCAGCGGTTTCCTTTACAGAACTCATACATGCCAGAGGTTTTAAAACGATTGTCTCTTGCACGCCAAATTGACAAAATAACACGAAAGGATTCTCAGGTGAAAGCTGAGAAAAACTGGTTTGATCGAAATGCTAACTCAGTTGAATTAGTTACTGAAAATGACGACAGTGAGGAGGAACAAGTGAACAAACACAAGCAAATGAAAGCCAGTTCTAAACAGTTGAAGACATTGCAACAGGAGCTCAAAATGTTGATTTCACGTCCTTTACAATCAAAGACATTTTCACATCGATATTTAGCAGGGGCTGGTGTCACACCTGTCATGCAGGAACAATTGCTACAATTAGCAAAGCAAAAACTAAATGATCGCCCGGGCTCAGGAGTAGGCAAGAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTTGAAGCACTTCAGGCACTCCGGAATGCTGGTGAAGAGGTGCGCATGGATGTCAAGGATTTTGCTGGAAAACGGAGAAATATAGAAAATCGGAAAAGAAAAAGAAAAGAGGAGAAGAAACGTTTGCGTGATCAGCGAAGAAAGCAGAAGAAAAAGCTAAAACAGGACAAGGACTAG 2442 0.4255 MEAATASTTSSQSRQRKLKRKRAAALASDPQLDRLNSLPWNPSFPRNNDEDDNNNENDPFAMLATGSNELEGGFLSLEEIDEADYGFSIPEPQINEKKNQKKKHKLDENVIEEKKKKEEEEGDDGVGGGGGGGSGEVEVKKEKKNDKKKKKKKKKTKKDKKKEEEKEEEAVTENQNVEKPDTGSLDTDVKDDDDDVGEEDFDETEFYAWNELRLHPLLMKAIYKLGSGKTLAFGLPILQRILEEREKATKMEEERGEEPEKYAPTGILRALIVAPTRELAIQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKSRPEIVVGTPGRLWELMSSGEKHLVELHSLSFFVLDEADRMVQNGHFKELQSIIDMLPMPNISAEDNSQHAQNCVTVSSYQRKKRQTLVFSATVALSADFRKKLKRGLVKQKQSFTEELNSIETLSERAGMRSNAAIIDLTNPSILAAKLEESFIECREEDKDAYLYYILTVHGQGRTIVFCTSIAALRHISSILRILGIDVWTLHAQMQQRARLKAMDRFRESENGILVATDVAARGLDIPGVRTVVHYQLPHSAEVYVHRSGRTARASAEGCSIALVSPKETAKFASLLKSFSKDNFQRFPLQNSYMPEVLKRLSLARQIDKITRKDSQVKAEKNWFDRNANSVELVTENDDSEEEQVNKHKQMKASSKQLKTLQQELKMLISRPLQSKTFSHRYLAGAGVTPVMQEQLLQLAKQKLNDRPGSGVGKKGKLVVIGQDCVEALQALRNAGEEVRMDVKDFAGKRRNIENRKRKRKEEKKRLRDQRRKQKKKLKQDKD 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00656 813 PANTHER ATP-DEPENDENT RNA HELICASE DDX24 91 734 - -
Aip02g00656 813 MobiDBLite consensus disorder prediction 1 67 - -
Aip02g00656 813 Pfam Helicase conserved C-terminal domain 476 584 IPR001650 -
Aip02g00656 813 MobiDBLite consensus disorder prediction 780 813 - -
Aip02g00656 813 Gene3D - 137 427 IPR027417 -
Aip02g00656 813 Coils Coil 681 701 - -
Aip02g00656 813 MobiDBLite consensus disorder prediction 85 198 - -
Aip02g00656 813 CDD SF2_C_DEAD 465 594 - -
Aip02g00656 813 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 464 625 IPR001650 -
Aip02g00656 813 MobiDBLite consensus disorder prediction 95 124 - -
Aip02g00656 813 MobiDBLite consensus disorder prediction 34 48 - -
Aip02g00656 813 Coils Coil 140 174 - -
Aip02g00656 813 SMART ultradead3 197 437 IPR014001 -
Aip02g00656 813 Coils Coil 101 123 - -
Aip02g00656 813 MobiDBLite consensus disorder prediction 783 813 - -
Aip02g00656 813 PANTHER RNA HELICASE 91 734 - -
Aip02g00656 813 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 349 357 IPR000629 -
Aip02g00656 813 Coils Coil 780 813 - -
Aip02g00656 813 Pfam DEAD/DEAH box helicase 225 410 IPR011545 GO:0003676|GO:0005524
Aip02g00656 813 Gene3D - 462 701 IPR027417 -
Aip02g00656 813 SMART helicmild6 504 585 IPR001650 -
Aip02g00656 813 MobiDBLite consensus disorder prediction 144 159 - -
Aip02g00656 813 MobiDBLite consensus disorder prediction 160 175 - -
Aip02g00656 813 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 226 427 IPR014001 -
Aip02g00656 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 269 600 IPR027417 -
Aip02g00656 813 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 373 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00656 Aip-Chr2 9741505 9747951 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00656 224 625 Eukaryotic Initiation Factors Gene Family AT5G11170 26.225 2.23e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00656 K14805 - gmx:100806018 1077.39