Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00652 ATGGCTATTATAACAACAACAAAGAGGACTGAACGGTTCCGTCGTACAACACCACCAACATGCAAGTATTGGCTAGCTGGGAGATGCAACAGAAATCCTTGTCAATTTTCACATAGCTTACCAACCTCGCCATCCAATGTATACTATAATGCCAATACGACATATAAGCATTCGAAGAAGCCCGATTCGTCCGTTGAGAAGATCGCCAGTTCCTCTGCTAAGAAGGCAATAAATTGCACACCCAAGAACTTCAAGAAGCCAGAAAATTGTGCACTAAAGGCTGTTGAGTGCAGACCAGAATCTATATCTGTTGGCTTGGCCAGTTCCTCTGTTAAGAAGGCAATAAATTGCGCACCCAAGGCCTTGAAGAAGCCAGAAAATTGTGCACAAAAGGCTGTTGAGTGCAGACCAGAAGCAGAAGCTATATCTGTTGAGAAGCCAACCAAGTGTGAAGAAAAGGCTGTATTGATTGAAAAGACTGCAGACGTGGAAGATGTGGCCACTGTTGCTAAGGCTTCTGTGGATAAATCACGCAGTATTTGCAAATCTTGGATGACTGACAATTGTGTGGACGGTGACTTGTGTCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTTCTACGCTTGCAAAGCTTCATGAACACAACAAGGCAATCACTGGCATTGCACTGCCGGCTGGTTCAAACAAACTTATTTCTGGTAGCACTGACGGCACAGTTCGAGCATGGGACTGCAACACTGGCCGTTGTGTTAACATGATCCATCTTAATTCTCCAGTTACCTCACTTATATCTGAGGGCCCATGGATCTTTGCCGGTGTGAAAAATGCTGTGAAAGCATGGAATATTCATACGGGTGCAGATGTTACTCTTGATGGACCTAAAGGGCAAGTCCTTTCATTGAATGTAGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATGCAGCTTTGAGTCTCCTTTCAAAATGGTTGCAACACTAGGTGGTCATAGTAAACCAGTGGTTTGTCTTGCTATTGGATCTCACAAGATGCTTTATTCTGGATCCATGGACCATAGCATTAAGGTTTGGGACCTTGATACATTCCAGGGCACAATGACACTTAACGGGCATACCGACGTTGTCACATCACTTATTTGCTGGGACAATTACTTGTTATCGGGTTCATCTGATTGCACAGTCAATGTTTGGGTGTGCACCGAGGAGGGAACTCTAGAAGTGACATACACTCACACTCACCAAATTGCTGTTCTTGGACTGTATGGGATGACTGATGTAGAGGCCAAGCCAATATTGTTTTGCTCGTGCAAAGATAATTCAGTTCGTATGTATGAATTGCCGACGTTTCTAGAGAGAGGTCGACTATTTACAAGACAAGAAGTTCGATCCTTTCAGATAGGCCCTGGCGGACTCTTCTTCACTGGAGATGGGACTGGTTTGCTGAATGTGTGGAAATGGTTAGAAGAGGCCAAGAGGCAGAGGCAGAGGCAGAGGCATTGCAAGTTGAGTATTGCGAATCAAGTTTCTAGAAGGATTCAAGTTTCTTACAACTGGAGTGATGATTCGGTCTTCCACCATGATCTTAATGCTGCTGCAGTATGA 1626 0.4428 MAIITTTKRTERFRRTTPPTCKYWLAGRCNRNPCQFSHSLPTSPSNVYYNANTTYKHSKKPDSSVEKIASSSAKKAINCTPKNFKKPENCALKAVECRPESISVGLASSSVKKAINCAPKALKKPENCAQKAVECRPEAEAISVEKPTKCEEKAVLIEKTADVEDVATVAKASVDKSRSICKSWMTDNCVDGDLCQNLHSWFYGDGFSTLAKLHEHNKAITGIALPAGSNKLISGSTDGTVRAWDCNTGRCVNMIHLNSPVTSLISEGPWIFAGVKNAVKAWNIHTGADVTLDGPKGQVLSLNVGNDILLAGAEDGVIYAWRCSFESPFKMVATLGGHSKPVVCLAIGSHKMLYSGSMDHSIKVWDLDTFQGTMTLNGHTDVVTSLICWDNYLLSGSSDCTVNVWVCTEEGTLEVTYTHTHQIAVLGLYGMTDVEAKPILFCSCKDNSVRMYELPTFLERGRLFTRQEVRSFQIGPGGLFFTGDGTGLLNVWKWLEEAKRQRQRQRHCKLSIANQVSRRIQVSYNWSDDSVFHHDLNAAAV 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00652 541 PRINTS G protein beta WD-40 repeat signature 393 407 IPR020472 -
Aip02g00652 541 PRINTS G protein beta WD-40 repeat signature 353 367 IPR020472 -
Aip02g00652 541 PRINTS G protein beta WD-40 repeat signature 232 246 IPR020472 -
Aip02g00652 541 PANTHER - 14 499 IPR044715 -
Aip02g00652 541 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 335 369 - -
Aip02g00652 541 ProSiteProfiles Zinc finger C3H1-type profile. 15 41 IPR000571 GO:0046872
Aip02g00652 541 SMART WD40_4 369 406 IPR001680 GO:0005515
Aip02g00652 541 SMART WD40_4 328 366 IPR001680 GO:0005515
Aip02g00652 541 SMART WD40_4 456 493 IPR001680 GO:0005515
Aip02g00652 541 SMART WD40_4 285 322 IPR001680 GO:0005515
Aip02g00652 541 SMART WD40_4 412 453 IPR001680 GO:0005515
Aip02g00652 541 SMART WD40_4 206 245 IPR001680 GO:0005515
Aip02g00652 541 Pfam WD domain, G-beta repeat 209 245 IPR001680 GO:0005515
Aip02g00652 541 Pfam WD domain, G-beta repeat 331 366 IPR001680 GO:0005515
Aip02g00652 541 Pfam WD domain, G-beta repeat 373 405 IPR001680 GO:0005515
Aip02g00652 541 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 245 - -
Aip02g00652 541 ProSitePatterns Trp-Asp (WD) repeats signature. 353 367 IPR019775 -
Aip02g00652 541 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 254 IPR001680 GO:0005515
Aip02g00652 541 ProSiteProfiles Trp-Asp (WD) repeats profile. 335 375 IPR001680 GO:0005515
Aip02g00652 541 ProSiteProfiles Zinc finger C3H1-type profile. 175 202 IPR000571 GO:0046872
Aip02g00652 541 Gene3D - 332 533 IPR015943 GO:0005515
Aip02g00652 541 Gene3D - 199 331 IPR015943 GO:0005515
Aip02g00652 541 SMART c3hfinal6 176 201 IPR000571 GO:0046872
Aip02g00652 541 SMART c3hfinal6 15 40 IPR000571 GO:0046872
Aip02g00652 541 SUPERFAMILY WD40 repeat-like 198 494 IPR036322 GO:0005515
Aip02g00652 541 ProSiteProfiles Trp-Asp (WD) repeats profile. 376 405 IPR001680 GO:0005515
Aip02g00652 541 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 14 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00652 Aip-Chr2 9710716 9714848 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00652 274 457 Miscellaneous Gene Families AT5G08390 28.272 2.88e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip02g00652 WD40 0.013 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00652 - - ahf:112726849 744.577