Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00646 ATGGGTTCAATTCTCAAATTTCGTAACATATATGGTTCCTTTAAATGCTTTCATTCTAAACCTAATTGGGGTTCCGGTGCTTCAGATAAAACCCCCAAATTGGAACCAAATAGGAATAACAATAGGGTAGGGATTTTTTGGGACTTAGATAACAAGCCACCAAACGCAATTCCACCTTTTGAAGTTGCCAATAAGCTTAGAATTGTTGCATCTTCATTTGGGGTTGTTAGGTATATGGTAGCTTATGCAAATAGCCACACTTTCACCAGTGTCCCACACGCTGTTCGGCAGAGGAGGAAAGAGAAGGAGCTGTATAATCGATTGGAGAGCAAAGGCGTCATCAAGCGGAATGAGCCTCATGTTTGCAGGGTTTGTGGGAGAAAGTTTTACACTAATGAGAAGCTTGTTAACCATTTCTAG 420 0.4095 MGSILKFRNIYGSFKCFHSKPNWGSGASDKTPKLEPNRNNNRVGIFWDLDNKPPNAIPPFEVANKLRIVASSFGVVRYMVAYANSHTFTSVPHAVRQRRKEKELYNRLESKGVIKRNEPHVCRVCGRKFYTNEKLVNHF 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00646 139 ProSiteProfiles Zinc finger C2H2 type domain profile. 120 139 IPR013087 -
Aip02g00646 139 PANTHER - 31 139 - -
Aip02g00646 139 PANTHER ZINC FINGER (C2H2 TYPE) FAMILY PROTEIN 31 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00646 Aip-Chr2 9645348 9645767 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00646 42 139 C2H2 Transcription Factor Family AT4G12240 60.204 1.13e-40 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip02g00646 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00646 - - aip:107624837 285.804