Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00643 ATGGCTATTATAACAACAACAAAGAGGACTGAACGGTTCCGTCGTACAACACCACCAACATGCAAGTATTGGCTGGCTGGGAGATGCAACAGAAATCCTTGTCAATTTTCACATAGCTTACCAACCTCGCCATCCAATGTATACTATAATGCCAATACGACATATAAGTATTCGAAGAAGCCCGATTCGTCCGTTGAGAAGATCGCCAGTTCCTCTGCTAAGAAGGCAATAAATTGCACACCCAAGGCCTTCAAGAAGCCAGAAAATTGTGCACTAAAGGCTGTTGAGTGCAGACCAGAATCTATATCTGTTGGCTTGGCCAGTTCCTCTGCTAAGAAGGCAATAAATTGCGCACCCAAGGCCTTGAAGAAGCCAGAAAATTGTGCACCAAAGGCTGTTGAGTGCAGACCAGAAGCAGAAGCTATATCTGTTGAGAAGCCAACCAAGTGTGAAGAAAAGGCTGTATTGATTGAAAAGACTGCAGACGTGGAAGATGTGGCCACTATTGCTAAGGCTTCCACTATTGCTAAGGCTTCTGTGGATAAATCACACAGTATTTGCAAATCTTGGATGACTGACAATTGTGTGCATGGTGACTTGTGTCAGAATTTGCATTCATGGTTTTATGGTGATGGGTTTTCTACGCTTGCAAAGCTTCATGAACACAACAAGGCAATCACTGGCATTGCACTGCCGGCTGGTTCAAACAAACTTATTTCTGGTAGCACTGACGGCACAGTTCGGGCATGGGACTGCAACACTGGCCATTGTGTTAACATGATCCAACTTGATTCTCAAGTTACCTCACTCATATCTGAGGGCCCATGGATTTTTGCCGGTGTGAAAAATGCTGTGAAGGCATGGAATATTCAGACGGGTGCAGATGTTATTCTTGATGGACCTAAAGGGCAAGTCCTTTCCTTGAATGTTGGCAATGATATCCTCCTTGCTGGAGCAGAGGATGGTGTTATTTATGCTTGGAGATGCAGCTTTGAGTCTCCTTTCAAAATGGTTGCAACACTAAGTGGACATAGCAAACCAGTGGTTTGTCTTGCTATTGGATGTCACAAGATGCTTTACTCTGGATCCATGGACCATAGCATTAAGGTAGTTTGGGACCTTGATACATTCCAGTGCACAATGACACTTAACGGACATACCGACGTTGTCACATCACTTATTTGCTGGGAGAATTACTTGTTATCGGGTTCATCTGATTGCACAGTCAATGTTTGGGTGTGCACCAAGGAGGGAACTCTAGAAGTGACATACACTCACACTCACGAAAATGCTGTTCTTGGACTGTATGGGATGACTGATGCAGAGGCCAAGCCAATATTGTTCTGCTCGTGCAAAGATAATTCAGTTCGTATGTATGAATTGCCGACGTTTCTAGAGAGAGGTCGACTATTTACAAGACAAGAAGTTCGATCCTTTCAGATAGGCCCTAGTGGACTCTTCTTCACTGGAGATGGGACTGGTTTGCTGAATGTGTGGAAATGGTTAGAAGAGGCCAAGGTGCCAACATAG 1530 0.4438 MAIITTTKRTERFRRTTPPTCKYWLAGRCNRNPCQFSHSLPTSPSNVYYNANTTYKYSKKPDSSVEKIASSSAKKAINCTPKAFKKPENCALKAVECRPESISVGLASSSAKKAINCAPKALKKPENCAPKAVECRPEAEAISVEKPTKCEEKAVLIEKTADVEDVATIAKASTIAKASVDKSHSICKSWMTDNCVHGDLCQNLHSWFYGDGFSTLAKLHEHNKAITGIALPAGSNKLISGSTDGTVRAWDCNTGHCVNMIQLDSQVTSLISEGPWIFAGVKNAVKAWNIQTGADVILDGPKGQVLSLNVGNDILLAGAEDGVIYAWRCSFESPFKMVATLSGHSKPVVCLAIGCHKMLYSGSMDHSIKVVWDLDTFQCTMTLNGHTDVVTSLICWENYLLSGSSDCTVNVWVCTKEGTLEVTYTHTHENAVLGLYGMTDAEAKPILFCSCKDNSVRMYELPTFLERGRLFTRQEVRSFQIGPSGLFFTGDGTGLLNVWKWLEEAKVPT 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00643 509 SMART c3hfinal6 182 207 IPR000571 GO:0046872
Aip02g00643 509 SMART c3hfinal6 15 40 IPR000571 GO:0046872
Aip02g00643 509 Gene3D - 138 373 IPR015943 GO:0005515
Aip02g00643 509 SUPERFAMILY WD40 repeat-like 196 500 IPR036322 GO:0005515
Aip02g00643 509 ProSiteProfiles Zinc finger C3H1-type profile. 15 41 IPR000571 GO:0046872
Aip02g00643 509 ProSiteProfiles Zinc finger C3H1-type profile. 181 208 IPR000571 GO:0046872
Aip02g00643 509 Pfam WD domain, G-beta repeat 337 373 IPR001680 GO:0005515
Aip02g00643 509 Pfam WD domain, G-beta repeat 378 412 IPR001680 GO:0005515
Aip02g00643 509 Pfam WD domain, G-beta repeat 215 251 IPR001680 GO:0005515
Aip02g00643 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 383 412 IPR001680 GO:0005515
Aip02g00643 509 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 14 507 - -
Aip02g00643 509 SMART WD40_4 291 328 IPR001680 GO:0005515
Aip02g00643 509 SMART WD40_4 376 413 IPR001680 GO:0005515
Aip02g00643 509 SMART WD40_4 212 251 IPR001680 GO:0005515
Aip02g00643 509 SMART WD40_4 419 460 IPR001680 GO:0005515
Aip02g00643 509 SMART WD40_4 463 500 IPR001680 GO:0005515
Aip02g00643 509 SMART WD40_4 334 372 IPR001680 GO:0005515
Aip02g00643 509 Gene3D - 374 508 IPR015943 GO:0005515
Aip02g00643 509 PANTHER - 14 507 IPR044715 -
Aip02g00643 509 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 251 - -
Aip02g00643 509 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 260 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00643 Aip-Chr2 9612591 9628783 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00643 196 378 Miscellaneous Gene Families AT5G08390 23.232 9.84e-06 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aip02g00643 WD40 0.0032 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00643 - - ahf:112726849 755.362