Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00586 ATGCTCGACGTAGATTCTCGCGTCGACTCCACCATGTCCGTTGAGCTCGACCAGCAAGCATCCCTAACCAATTCATTTCAGAAAGCATACATTCGTGTTCCTTATCTCAGCGCCATTGATTTCTCAGCCACAAATGATGTCATTGAGAGAGAGCTCTACAAGCTCATGACTATGCAAACTAGAGTCTTTGTTGTTCACATGACATTCCGTCTTGCCTCTCGTCTCTTCTCCATTGCCAAAGACATTGGAATGATGGATGAAGGTTATGTTTGGATTGTGACTGCTGGAATTGCTAATCTTTTTAACTCATTGGACTCTTCGGTTATGGAATCCATGGAAGGTGTGTTGGGTGTTAGGCCTTATATTCCAAGAACAAAACAGCTTCTTGATTTTAGAGCTCGATGGAAAAGAGAGTTCTTAAGAGACAATCCAACACTTGTTGATGTTAATTTGGATGTTTTTGGAATATGGGCCTATGATGCTACTGCTGCATTAGCCATGGCAGTTGAGAAGCTTGACAACACTGTTTTCGGCTTCACTAATGTGAGCAACAACTCCAACAACGTGACTGATCTTGAAAACTTAGGCGTTTCACGAGACGGCGAGAAGCTGAGGGAAGCTTTATCAAATGTTAGATTCAAAGGTGTTGGTGGTGAGTTCAAAGTAGTGGGTGGTGGGAAGTTAGAAACATCACCATTTGAGATAGTTAATGTGATTGGTAATAGTGAAAGAAACATTGGATTTTGGACACCACAGAAGGGACTAATCAGAGACATGGATGCAAATAATTCAACTTCTAAGGAGAATCTAAGAGCAATTCTATGGCCAGGGGACTCTTACTCTGTTCCAAAGGGATGGGAAATTCCCACAAATGGTAACAAGTTAAAGATAGGAGTCCCAGTAAAAGATAATGGCTTCTCTGAATTTGTGAAAGTAATCCATGATCCTATTACCAATTCTACAAAGGTCACCGGGTTCTGCATTGATGTGTTTAATGCTGTGGTAGAAGCGTTGCCTTATGCCCTTCCATTTGAATTCATTCCATTTGAAAATTCCAACAATGAGATGGCAGGAACATATGATGATTTGATCACCCAAGTTTATTATGAAAAGTTTGATGCTGTGGTGGGGGACACAACAATTACGGGAAACAGGTCCAAGTATGTCGATTTCACATTGCCGTACACAGAATCTGGTGTGACTATGGTTGTTCCAGTAAGAGACAATAGAAAGAAGAATGCATGGGCCTTCTTGAAGCCATTGACATGGGACCTTTGGGTAACAATATTTTTTACCTTTGTTTTCATAGGATTTGTTGTTTGGGTACTTGAACACCGAATCAATGAATGTTTTAGAGGGCCTATGCCTTATCAAATTGGCACTAGCTTGTGGTTTTCCTTCTCAACCATGGTATTTTCTCATCAAGAGAGAGTGGAGAGCAATTATGGAAGATTTGTGGTGATAGTATGGGTTTTTGTAGTTCAAATTCTGGTTCAAAGCTACACTGCAAGTCTTACCTCTCTCTTAACAGTTGAACGACTACGCCCAGCATTTACAGATGTTCATCAACTCTTAAAGAATCGGTTGAATGTTGGTTATTTGGAAGGTTCTTTTGTTCATGAAATCTTGAAGGATTTGGGGTTCCATGAAAACCAGCTTAAGATATATAAATCTGCAGAAGAATGCAATGATCTCTTCACAAAAGGAAGTGCTAATAATGGCATCGATGCGGCTTTTGACGAAGTCCCTTACGTGATGCACCTTCTTGGAACTTATTGCTCCAAGTATGCCATGGTTGAGCCAAGATTTAAAACTGGTGGCTTTGGCTTTGTGTTTCCAAAAGGGTCACCTCTAGTGGGAGACATATCACGTGCAATCTTGAATGTGAGTGAAGGAGGCAAAATGAGAAGAATTGAGAATGCATGGTTGAATGGAAGCAGTTGTCAAGATTCAAATAACAATGCAGCACAAGTATCTTCTACAAGCCTAGGACTAGAAAGCTTCTGGGGTCTGTTCTTGGTTGTAGTAGTTCTATAA 2037 0.407 MLDVDSRVDSTMSVELDQQASLTNSFQKAYIRVPYLSAIDFSATNDVIERELYKLMTMQTRVFVVHMTFRLASRLFSIAKDIGMMDEGYVWIVTAGIANLFNSLDSSVMESMEGVLGVRPYIPRTKQLLDFRARWKREFLRDNPTLVDVNLDVFGIWAYDATAALAMAVEKLDNTVFGFTNVSNNSNNVTDLENLGVSRDGEKLREALSNVRFKGVGGEFKVVGGGKLETSPFEIVNVIGNSERNIGFWTPQKGLIRDMDANNSTSKENLRAILWPGDSYSVPKGWEIPTNGNKLKIGVPVKDNGFSEFVKVIHDPITNSTKVTGFCIDVFNAVVEALPYALPFEFIPFENSNNEMAGTYDDLITQVYYEKFDAVVGDTTITGNRSKYVDFTLPYTESGVTMVVPVRDNRKKNAWAFLKPLTWDLWVTIFFTFVFIGFVVWVLEHRINECFRGPMPYQIGTSLWFSFSTMVFSHQERVESNYGRFVVIVWVFVVQILVQSYTASLTSLLTVERLRPAFTDVHQLLKNRLNVGYLEGSFVHEILKDLGFHENQLKIYKSAEECNDLFTKGSANNGIDAAFDEVPYVMHLLGTYCSKYAMVEPRFKTGGFGFVFPKGSPLVGDISRAILNVSEGGKMRRIENAWLNGSSCQDSNNNAAQVSSTSLGLESFWGLFLVVVVL 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00586 678 Gene3D - 414 553 - -
Aip02g00586 678 Gene3D - 11 150 - -
Aip02g00586 678 Gene3D - 295 413 - -
Aip02g00586 678 Pfam Receptor family ligand binding region 22 240 IPR001828 -
Aip02g00586 678 SUPERFAMILY Periplasmic binding protein-like II 271 645 - -
Aip02g00586 678 Gene3D - 198 294 - -
Aip02g00586 678 CDD GluR_Plant 293 643 - -
Aip02g00586 678 Gene3D - 592 650 - -
Aip02g00586 678 Pfam Ligand-gated ion channel 645 676 IPR001320 GO:0015276|GO:0016020
Aip02g00586 678 PANTHER GLUTAMATE RECEPTOR 2.9 20 677 - -
Aip02g00586 678 SMART GluR_14 294 645 IPR001320 GO:0015276|GO:0016020
Aip02g00586 678 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 20 677 - -
Aip02g00586 678 Pfam Bacterial extracellular solute-binding proteins, family 3 320 644 IPR001638 -
Aip02g00586 678 SUPERFAMILY Periplasmic binding protein-like I 20 287 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00586 Aip-Chr2 8779607 8786008 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00586 37 675 Ion Channels AT2G29110 54.432 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00586 K05387 - pvy:116134990 800.816