Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00574 ATGGCTACTCCCGATGAGAAAGAGAAGATGAGTTTGGGTTTGAGTCTCAGCTTAGGATTATTTGGAGATAATAATAATAATAATAATAACAATAATAAGAACGAAGAGCAAGAAGCTTTGAAGCTCAATCTCATCCAGAAGCCTCTACCTCAATCATTTCCAAACCATAGGCTTTCCTTCAACAACTTGTTTCCTTTTCATGATCTGAGCTCCGAGACGAGGTCGTTCCTTCGCGGAATAGACGTTAATTCGGTGCCGACGTTTACGGCGGCGACGGCGGCATGCGAAGACGAGAACGGCGTCTCGTCGCCGAACAGCACGGTGTCGAGCATCAGCGGTAAGCGGAGCGAGAGGGAACCCAACGGAAACGACGAGAACGAAGCCGCAGAGAGAGCCTCGTATTCTCGAGGGAGCGACGAAGAAGACGGCGGAGGAATCGGCGGCGATGCCGACGGGGATAGTTCGAGAAAGAAGCTGCGGTTGTCCAAGGAGCAGGCGGCGGTTCTGGAAGAGACCTTCAAGGAGTACAACACTCTCAACCCGAAACAAAAGCAAGCATTGGCAAAGCAGTTGAATCTGAGGCCAAGACAGGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAATTGAAGCAAACTGAAGTTGATTGTGAATACTTGAAAAGATGTTGTGAGAATCTAACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAGCTCAGAGCATTGAAGTTATCACCACAACTTTACATGCACATGAACCCTCCCACCACCCTTACAATGTGCCCTTCATGTGAGCGTGTAGCCGTCTCGTCCACCGGATCCTCCTCCTCGTCGGCCACCATGCAATCCGCCCCTGCCTCAGCTAGTCAAAACCAAATGGGCCCTAACATTCAGCGGCCGGTTCCTGTCAATCCATGGGGAGCAATGTCAATTCAACGCCGGCCGATTGAGAGCCCGACTACCCGGCCATAA 981 0.5046 MATPDEKEKMSLGLSLSLGLFGDNNNNNNNNNKNEEQEALKLNLIQKPLPQSFPNHRLSFNNLFPFHDLSSETRSFLRGIDVNSVPTFTAATAACEDENGVSSPNSTVSSISGKRSEREPNGNDENEAAERASYSRGSDEEDGGGIGGDADGDSSRKKLRLSKEQAAVLEETFKEYNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSTGSSSSSATMQSAPASASQNQMGPNIQRPVPVNPWGAMSIQRRPIESPTTRP 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00574 326 Coils Coil 218 248 - -
Aip02g00574 326 Pfam HD-ZIP protein N terminus 8 119 IPR006712 GO:0005634
Aip02g00574 326 ProSiteProfiles 'Homeobox' domain profile. 152 212 IPR001356 GO:0003677
Aip02g00574 326 MobiDBLite consensus disorder prediction 96 159 - -
Aip02g00574 326 SMART halz 212 255 IPR003106 GO:0006355|GO:0043565
Aip02g00574 326 SMART HOX_1 154 216 IPR001356 GO:0003677
Aip02g00574 326 MobiDBLite consensus disorder prediction 272 326 - -
Aip02g00574 326 SUPERFAMILY Homeodomain-like 142 213 IPR009057 -
Aip02g00574 326 Pfam Homeodomain 156 210 IPR001356 GO:0003677
Aip02g00574 326 Pfam Homeobox associated leucine zipper 212 246 IPR003106 GO:0006355|GO:0043565
Aip02g00574 326 MobiDBLite consensus disorder prediction 272 301 - -
Aip02g00574 326 CDD homeodomain 156 213 IPR001356 GO:0003677
Aip02g00574 326 PANTHER - 10 315 - -
Aip02g00574 326 MobiDBLite consensus disorder prediction 96 116 - -
Aip02g00574 326 Gene3D - 160 210 - -
Aip02g00574 326 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT3 10 315 - -
Aip02g00574 326 MobiDBLite consensus disorder prediction 117 138 - -
Aip02g00574 326 ProSitePatterns 'Homeobox' domain signature. 187 210 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00574 Aip-Chr2 8583456 8586846 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00574 50 318 Homeobox Transcription Factor Family AT3G60390 63.345 3.35e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip02g00574 HD-ZIP_N 9.7e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00574 K09338 - gmx:100798480 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00574 02 8583456 8586846 Aip02g00574 02 8583456 8586846 ECH
Aip02g00574 02 8583456 8586846 Aip04g03192 04 125866922 125869536 PCT