Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00554 ATGAGACTTGATGGGGATAGGTTATCAATTAGTGGATTTGAATCTGTGGTGGAGTGTGCATTTAAGGCAAGGATCATCCACCATCTAAATTCCCTCCAAGAAATATATATCTCTTGGTCTGAGTCTGTTGTATCCTTGGGGGGCAATTGTTTACCCAAATCTTTGCAAAAACTCACAATCTTTCATTGCCACCGCATTGAATTACTCCAGCAACAACAGAAGTATGATTTGGTAGATCTACAAATATATGAAAGCTGTGATTCACTGACCTCATTGTCGTTGGATGCCTTTCCTACTCTCATGAATCTCCAGATAAAAGAGAGTTCAAATCTGGAATCAGTGTCAACGTCAGAGCCACCACACGCTTCTCTTCAACGTCTCACCATCTTTAACTGCTCCCAATTAGTGTCTTTTCCCCAAGAAGGACTGGCTACACCCAACTTGACTCATCTCGATGTTAGCAAGTGCTCGAAGTTGGAGGCATTGCCACCTGGCATAAATACTCTTCTCCCAAACTTAGAGTCTCTCGACATACAAGGTTGCCCAAACATTTGTAGGTGGCCAGAGGGTGGTTTGCCGGCTAACCTGAAAGAGCTAAGTGTGAGAGAATGCGAGGAACAAGTGAGGGGTCTATCATGGTTGGGCAACTTGGACAACCTCATTCATCTCACCATCTCAGAATCTGGAGACATTGGAGTGCAACGAGCTTCTCCACCTCACCTCCCTTCAGCAATTGCACATTTCAAGCTGTTGGAAGCTGGAGAATATGGCAGGAGAAAAGCTGCCTCCCTCTCTCTTGCTACTTCGAATTCAATGATTTCTGAGCAGGTGGCTTGTGTACATATCAAGATGTGTTGGGAACCAGATACCGTGTTTTCTGATTTTGGCTTAATGTTATTGAAAAGCAAGGACATGATGGAGAAAGTTAGAGTAGTGGCACTTATGATTGATGCTTTTGTTGTTGTAGATTCGGACTCTAATGTTACTTCTTCATCAAGCAATCCCACCGAAATCATCAAGCTTTTTTCCCATCATCCTTCACAAATTCAGTTCGCCATCCTTGGCTATAACTCTCTCAGGCAAAAGATGCTGGTTCGCTGGGTTCCACCTTCCGAAGGGCCATCAAACTCAATGTGGATGGAAGTTCAAGAAGAAATCCAGGAAGAGCAGAATGTGGCGGCTTGCTCAGAGATCAAGATGGCAACTGTATTGCCGGATTTAAAGGTGGAATGTGAAAGTGATTGCATGGTGGCTCTGAAGATTATTCATGGCAATGCCGAAGACTTTCCAGAATTCGCACACATTGTCGAAGAAATTCATCAGTTGATGCTTCTTGAGTGGGACGTCACTATCTATCATATCATAAGGGAAGAAAATTCGTGTGCTGATTTTTTGGCAAAGATGGGTTCTTCTTCAAATTATACGTTTTCTCTTATGATCAACCCTCTCCCAGAACTCACTGTTCTTCTTCTTGCCGACTCCAAGAGTGTTCTTTATTCTAGACTGGACACCCTGTTGGACTCCAAGCTCGTGTATCAGAATTCAGAAGTATACTCACTGTTAGAACCTGGATCTCATGATGTTAGAATGGTTGGCATTTATGGTATTGGCGAAATTGGTGTTGAAAGGTGCACTGAGCTGAAGAACTTACCAAGTGTCTTAAAGTTGCCATCTTTAGGATGCATTGCTCTTAATGGTTGTTCTCAACTTGAGAAGTTTCCAGAATTGTTGGGAGAAATGGAAAACTTGAGAATTATTGAGGTGGAAGAGACTGCAATACAAGAATTGCCTTCTTGTATCATCAATTTCAGTAGCCTTGAGGTTTTAGTGCTGAAATGTTGCACAAATCTAAAGGAACTTCCTATAAACATTGATATGTTGCCAAATCTTCAGTTACTTGATATTTCTGGCTGTCCACAACTTCAACTATTTACAAAGAAACTTAGGAGGTTCAGCACACAGAATTGCTCAACTATTCTGTAA 1983 0.4211 MRLDGDRLSISGFESVVECAFKARIIHHLNSLQEIYISWSESVVSLGGNCLPKSLQKLTIFHCHRIELLQQQQKYDLVDLQIYESCDSLTSLSLDAFPTLMNLQIKESSNLESVSTSEPPHASLQRLTIFNCSQLVSFPQEGLATPNLTHLDVSKCSKLEALPPGINTLLPNLESLDIQGCPNICRWPEGGLPANLKELSVRECEEQVRGLSWLGNLDNLIHLTISESGDIGVQRASPPHLPSAIAHFKLLEAGEYGRRKAASLSLATSNSMISEQVACVHIKMCWEPDTVFSDFGLMLLKSKDMMEKVRVVALMIDAFVVVDSDSNVTSSSSNPTEIIKLFSHHPSQIQFAILGYNSLRQKMLVRWVPPSEGPSNSMWMEVQEEIQEEQNVAACSEIKMATVLPDLKVECESDCMVALKIIHGNAEDFPEFAHIVEEIHQLMLLEWDVTIYHIIREENSCADFLAKMGSSSNYTFSLMINPLPELTVLLLADSKSVLYSRLDTLLDSKLVYQNSEVYSLLEPGSHDVRMVGIYGIGEIGVERCTELKNLPSVLKLPSLGCIALNGCSQLEKFPELLGEMENLRIIEVEETAIQELPSCIINFSSLEVLVLKCCTNLKELPINIDMLPNLQLLDISGCPQLQLFTKKLRRFSTQNCSTIL 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00554 660 SUPERFAMILY L domain-like 111 646 - -
Aip02g00554 660 CDD RNase_H_like 398 467 IPR044730 -
Aip02g00554 660 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515
Aip02g00554 660 Gene3D - 380 475 IPR036397 GO:0003676
Aip02g00554 660 Gene3D Ribonuclease Inhibitor 7 277 IPR032675 -
Aip02g00554 660 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN SOG2 23 251 - -
Aip02g00554 660 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN SOG2 416 642 - -
Aip02g00554 660 SUPERFAMILY Ribonuclease H-like 402 474 IPR012337 -
Aip02g00554 660 Gene3D Ribonuclease Inhibitor 534 659 IPR032675 -
Aip02g00554 660 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 23 251 - -
Aip02g00554 660 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 416 642 - -
Aip02g00554 660 Pfam Reverse transcriptase-like 408 468 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00554 Aip-Chr2 8223008 8229570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00554 539 650 WRKY Transcription Factor Family AT4G12020 39.286 3.05e-14 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00554 - - aip:107624781 468.774