Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00546 ATGTTGGTGAATGATGATGGGAATGAAGTTGTGACTTGTCCCGAGTGTCCACATTGTCATAGATTGTTCTGTGCACAGTGTAAAGTTGCATGGCATGGTGGAATGAAATGTGGTGAGTTTATGAGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATGAATCTTGCAAAGGATAAGAGATGGAGAAGGTGTTCTAAATGCAGATTCTATGTTGAAAAAAGTCAGGGATGTTCACACATTTCTTGCAGGTGTGGCCATCAATTCTGTTATGCTTGTGGAAAGCCATGGAATCAGTATCATGGTTGTACATAA 321 0.3925 MLVNDDGNEVVTCPECPHCHRLFCAQCKVAWHGGMKCGEFMSLNENEREKEDLMVMNLAKDKRWRRCSKCRFYVEKSQGCSHISCRCGHQFCYACGKPWNQYHGCT 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00546 106 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 105 - -
Aip02g00546 106 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 105 IPR031127 GO:0004842|GO:0016567
Aip02g00546 106 SUPERFAMILY RING/U-box 12 40 - -
Aip02g00546 106 Gene3D - 35 106 - -
Aip02g00546 106 ProSiteProfiles TRIAD supradomain profile. 1 106 IPR044066 -
Aip02g00546 106 SUPERFAMILY RING/U-box 48 105 - -
Aip02g00546 106 Pfam IBR domain, a half RING-finger domain 58 105 IPR002867 -
Aip02g00546 106 Pfam IBR domain, a half RING-finger domain 15 37 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00546 Aip-Chr2 8031351 8032249 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00546 15 98 C3H Transcription Factor Family AT2G19610 35.294 7.60e-13 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00546 K11975 - aip:107626741 249.21