Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00544 ATGGATTCAAAACCATTCCAAGAGATTTTCATCAACCAAAACTGTAACCACTCATTCTGTGATGAATGCATTGCAAAATATGTGGCTGCAAAGATTCAAGAGAATATATCAAATGTGAAGTGTCCTGAACCAAAATGCAGAGGAATATTGGAGCCTCAGAATTGCATGTCAATAATTCCAAAGGAGGTGTTTGAAAGATGGGAAAATGCACTTTGTGAGAATCTTGTTCTTGCAACATCAAAGAAATTCTATTGCCCTTTCAAGGATTGTTCAGCAATGTTGGTGAATGATGATGGGAATGAAGTTGTGACTTGTTCTGAGTGTTCACATTGTCATAGATTGTTCTGTGCACAGTGTAAAGTTGCATGGCATGGTGGAATGGAATGTGGTGAGTTTATGGGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATGAATCTTGCAAAGGCTAAGAGATGGAGAAGGTGTGGCCATCGCTTCTGCTTGTGGAAAGCCATGGAATCAGTACCATGGTTGAACAAGGCACAAGAGCAGCAGCATGTTAAGTCCAACATCTCCGTCAAGAAAAGGAGATTCCTCACCATGATGATCTGCCTTCTGTCACCAAAATTTATGAAACGATCAAGCTTCAAGCATCAGATTCTTCTTCCGATGAAAGAACACGATCCAGCACACCTCATGCCCAAGTTGGAATCAGGAAAGAACGAGAGGGAAGACAGTCCAGATCCACAATCACAAGCTTGGAGTCCCGTTCCCAACAAGCTCCAGAAACCCAACTCCACCATGGACCAATCCTCTTCTGAAGCCTCCATAAGAAAAGCCCGTGTTTCAGTCCGTGCTCCCTCAGAAGCTCCCATGGTATCTCCCTCTTCTTATTCGTATGGATCAATTAATTAA 906 0.4216 MDSKPFQEIFINQNCNHSFCDECIAKYVAAKIQENISNVKCPEPKCRGILEPQNCMSIIPKEVFERWENALCENLVLATSKKFYCPFKDCSAMLVNDDGNEVVTCSECSHCHRLFCAQCKVAWHGGMECGEFMGLNENEREKEDLMVMNLAKAKRWRRCGHRFCLWKAMESVPWLNKAQEQQHVKSNISVKKRRFLTMMICLLSPKFMKRSSFKHQILLPMKEHDPAHLMPKLESGKNEREDSPDPQSQAWSPVPNKLQKPNSTMDQSSSEASIRKARVSVRAPSEAPMVSPSSYSYGSIN 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00544 301 Pfam IBR domain, a half RING-finger domain 65 129 IPR002867 -
Aip02g00544 301 SMART ibrneu5 65 129 IPR002867 -
Aip02g00544 301 ProSitePatterns Zinc finger RING-type signature. 15 24 IPR017907 -
Aip02g00544 301 SUPERFAMILY RING/U-box 2 74 - -
Aip02g00544 301 MobiDBLite consensus disorder prediction 287 301 - -
Aip02g00544 301 Gene3D - 83 135 - -
Aip02g00544 301 ProSiteProfiles TRIAD supradomain profile. 1 212 IPR044066 -
Aip02g00544 301 MobiDBLite consensus disorder prediction 245 275 - -
Aip02g00544 301 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 2 160 - -
Aip02g00544 301 SUPERFAMILY RING/U-box 65 132 - -
Aip02g00544 301 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 160 IPR031127 GO:0004842|GO:0016567
Aip02g00544 301 MobiDBLite consensus disorder prediction 234 301 - -
Aip02g00544 301 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 78 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00544 Aip-Chr2 8025368 8027234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00544 14 164 C3H Transcription Factor Family AT2G31770 24.419 3.06e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00544 K11975 - gmx:100816161 252.292