Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00543 ATGGATTCAAAACCATTCCAAGAGATTTTCATCAACCAAAACTGTAATCACTCATTCTGTGATGAATGCATTGCAAAATATGTAGCTGCAAAGATTCAAGAGAATATATCAAATGTGAAGTGTCCTGAACCAAAATGCAGAGAAATATTGGAGCCTCAGAATTGCATGTCAATAATTCCAAAGGAGGTGTTTGAAAGATGGGAGAATGCACTTTGTGAGAATCTTGTTCTTGCAACATCAAAGAAATTCTATTGCTCTTTCAAGGATTGTTCAACAATGTTGGTGAATGATGATGGGAATGAAGTTGTGACTTGTTCTGAGTATCCAAATTGTCATAGATTGTTCTGTGCACAGTGTAAAATTGCATGGCATGGTGGAATGGAATGTGGTGAGTTTATGGGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATGAATCTTGCAAAGGATAAGAGATGGAGAAGGTGTGGCCATCGCTTCTGCTATGCTTGTGGAAAGCCATGGAATCAGAAAAGTAATAGGGGGGAGGGGAAGCCAGACAGTTGCTTGATTCAGGTATCAAATTCTTCTTCTGATGAAAGAACACGATCCAGCACACCTCACGCCCAAGTTGGAATCAGGAATAATAGCAATGGAAAGAACGAGAGGGAAGACAGTCCAGATTCACAATCACAAGCTTGGGGTCCCATTCCCAACAAGCTCCAGAAACCCAACCCCACCATGGACCAATCCTCTTCTGAAGCCACCATGAGAAAAGCCCGTGTTTCAGTCTGTGCTCCCTCAGAAGCTCCCATGGTATCTCCCTCTTCTTTATATGGATCGACTAATTAA 840 0.4131 MDSKPFQEIFINQNCNHSFCDECIAKYVAAKIQENISNVKCPEPKCREILEPQNCMSIIPKEVFERWENALCENLVLATSKKFYCSFKDCSTMLVNDDGNEVVTCSEYPNCHRLFCAQCKIAWHGGMECGEFMGLNENEREKEDLMVMNLAKDKRWRRCGHRFCYACGKPWNQKSNRGEGKPDSCLIQVSNSSSDERTRSSTPHAQVGIRNNSNGKNEREDSPDSQSQAWGPIPNKLQKPNPTMDQSSSEATMRKARVSVCAPSEAPMVSPSSLYGSTN 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00543 279 SUPERFAMILY RING/U-box 2 74 - -
Aip02g00543 279 ProSitePatterns Zinc finger RING-type signature. 15 24 IPR017907 -
Aip02g00543 279 MobiDBLite consensus disorder prediction 224 254 - -
Aip02g00543 279 ProSiteProfiles TRIAD supradomain profile. 1 265 IPR044066 -
Aip02g00543 279 MobiDBLite consensus disorder prediction 185 213 - -
Aip02g00543 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Aip02g00543 279 SUPERFAMILY RING/U-box 65 132 - -
Aip02g00543 279 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 2 160 - -
Aip02g00543 279 SMART ibrneu5 65 129 IPR002867 -
Aip02g00543 279 Pfam IBR domain, a half RING-finger domain 65 129 IPR002867 -
Aip02g00543 279 Pfam RING-type zinc-finger 14 42 IPR027370 -
Aip02g00543 279 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 160 IPR031127 GO:0004842|GO:0016567
Aip02g00543 279 MobiDBLite consensus disorder prediction 174 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00543 Aip-Chr2 8009703 8011668 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00543 189 270 WRKY Transcription Factor Family AT1G62300 52.326 3.74e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00543 K11975 - gmx:100815626 250.366