Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00539 ATGAATTCAAAACCATTCCAAGAGATTTTCATCAACCAAAACTGTAACTACTCATTCTGTGATGAATGCATTGCAAAATATATAGCTGCAAAGATTCAAGAGAATATATCAAATGTGAAGTGTCCTGAACCAAAATGCAGAGAAATATTGGAGCCTCGTAATTGCATGTCAATAATTCCAAAGGAGGTGTTTGAAAGATGGGAGAATGCACTTTGTGAGAATCTTGTTCTTGCAACATCAAAGAAATTCTATTGCTCTTTCAAGGATTGTTCAACAATGTTGGTGAATGATGATGGGAATGAAGTTGTGACTTGTTCTGAGTGTCCAAATTGTCATAGATTGTTTTGTGCACAGGGTAAAGTTGCATGGCATGGTGGAATGGAATGTGGTGAGTTTATGGGTTTGAATGAAAATGAAAGAGAGAAGGAAGATCTTATGGTGATGAATCTTGCAAAGGCTAATAAGAGATGGAGAAGGTGTGGCCATCGCTTCTGCTATGCTTGTGGAAAGCCATGGAATCAGAAAAGTAATAGGGGGGAGGGGAAGCCAGACAGTTGCTTGATTCAGGTATCAAATTCTTCTTCTGATGAAAGAACACGATCCAGCACACCTCACGCCCAAGTTGGAATCAGGAATAATAGCAATGGAAAGAACGAGAGGGAAGACAGTCCAGATTCACAATCACAAGCTTGGGGTCCCGTTCCCAACAAGCTCCAGAAACCCAACCCCACCATGGACCAATCCTCTTCTGAAGCCACCATGAGAAAAGCCCGTGTTTCAGTCTGTGCTCCCTCAGAAGCTCCCATGGTATCTCCCTCTTCTTTATATGGATCGACTAATTAA 843 0.414 MNSKPFQEIFINQNCNYSFCDECIAKYIAAKIQENISNVKCPEPKCREILEPRNCMSIIPKEVFERWENALCENLVLATSKKFYCSFKDCSTMLVNDDGNEVVTCSECPNCHRLFCAQGKVAWHGGMECGEFMGLNENEREKEDLMVMNLAKANKRWRRCGHRFCYACGKPWNQKSNRGEGKPDSCLIQVSNSSSDERTRSSTPHAQVGIRNNSNGKNEREDSPDSQSQAWGPVPNKLQKPNPTMDQSSSEATMRKARVSVCAPSEAPMVSPSSLYGSTN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00539 280 MobiDBLite consensus disorder prediction 175 280 - -
Aip02g00539 280 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 2 160 IPR031127 GO:0004842|GO:0016567
Aip02g00539 280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 77 IPR013083 -
Aip02g00539 280 SMART ibrneu5 65 129 IPR002867 -
Aip02g00539 280 SUPERFAMILY RING/U-box 3 74 - -
Aip02g00539 280 Pfam IBR domain, a half RING-finger domain 65 129 IPR002867 -
Aip02g00539 280 SUPERFAMILY RING/U-box 65 132 - -
Aip02g00539 280 MobiDBLite consensus disorder prediction 225 255 - -
Aip02g00539 280 ProSiteProfiles TRIAD supradomain profile. 1 190 IPR044066 -
Aip02g00539 280 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 2 160 - -
Aip02g00539 280 MobiDBLite consensus disorder prediction 186 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00539 Aip-Chr2 7917927 7919857 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00539 190 271 WRKY Transcription Factor Family AT1G62300 52.326 4.90e-11 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00539 K11975 - gmx:100815626 241.506