Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00517 ATGGAAATGGAAGGTTTTGCTGCTTCATCAGAGAGGAGTAGTGGTGTTGGAGGTGGGTATGCTTCATCTTCTTCACTGGTTTTGGATAGGGTGAAGGGTGAGTTGGTTGAGGCACCTGTGAAATTAGAGCGCAAGGGTGTGTTCCCTGAGAGAACCATTGAAGCTTTGAAGAACCACAGTGAAGCTGAGAGGAGGAGAAGAGCTAGAATCAATGCTCACCTTGATACACTCAGAACTGTCATCCCTGCTGCTAACAAGATGGACAAAGCATCATTACTGGCTGAGGTTATTAGACATCTGAAGGAGCTGAAAACGAAAGCAGCACAAGCATGTCAAGGCCTAATGATACCAAAGGACAATGATGAATTAAGAGTTGAAGAACAAGAAGGTGGATTGAATGGCTTCCCTTATTCAATAAGAGCATCTCTATGCTGCGAATACAAACCCGGCTTGTTATCTGATATAAGACAAGCACTTGATGCACTTCATCTTATGATAATAAGCGCAGAGATCGCGACGTTAGGAGGCAGGATGAAGAATGTATTTGTGATAATCAGCTGTGAAGAACAGAGCTTTGAAGATGCTGAGTATAGGCAGTTCCTGGCCGGATCGGTTCACCAAGCTCTTAGGTCTGTTCTTGATAGATTTTCTGTTTCACAGGACATCTTAGAGTCTAGAAAGAGGAGGAGAATTTCTATATTCAGTTCATCATCCTTGGAAGATTTTTTGTAA 732 0.429 MEMEGFAASSERSSGVGGGYASSSSLVLDRVKGELVEAPVKLERKGVFPERTIEALKNHSEAERRRRARINAHLDTLRTVIPAANKMDKASLLAEVIRHLKELKTKAAQACQGLMIPKDNDELRVEEQEGGLNGFPYSIRASLCCEYKPGLLSDIRQALDALHLMIISAEIATLGGRMKNVFVIISCEEQSFEDAEYRQFLAGSVHQALRSVLDRFSVSQDILESRKRRRISIFSSSSLEDFL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00517 243 Gene3D - 50 111 IPR036638 GO:0046983
Aip02g00517 243 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 5 243 - -
Aip02g00517 243 ProSiteProfiles ACT domain profile. 140 225 IPR002912 -
Aip02g00517 243 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 54 103 IPR011598 GO:0046983
Aip02g00517 243 PANTHER TRANSCRIPTION FACTOR BHLH30 5 243 IPR045847 GO:0003700|GO:0006355
Aip02g00517 243 SUPERFAMILY ACT-like 142 219 IPR045865 -
Aip02g00517 243 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 111 IPR036638 GO:0046983
Aip02g00517 243 MobiDBLite consensus disorder prediction 1 23 - -
Aip02g00517 243 Pfam Helix-loop-helix DNA-binding domain 58 103 IPR011598 GO:0046983
Aip02g00517 243 SMART finulus 60 109 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00517 Aip-Chr2 7526594 7529385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00517 41 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 40.306 8.74e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip02g00517 HLH 2.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00517 - - lja:Lj3g3v2848980.1 377.481