Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00480 ATGATGAGTAACAACAACATCATTAGCAACAACAACATTGGTGAAAGAGGAGGAGGGCAATTTGGGGACACCACTCTCACCAAGGTGTTTGTTGGAGGTTTGGCATGGGAGACTCCTAAAGAGGCACTTAGACAACACTTTGAGAAGTACGGCGAAATCCTCGAAGCCGTCATCATCTCCGACAAGCTCACCGGCAGATCCAAAGGCTATGGCTTTGTGACATTCAAGGAGGCAGAGGCCGCAAAGAAGGCATGCGAGGAGCAAGCAAGTTTGGTTATCAATGGACGCAAAGCTAACTGTAATCTTGCTTCCCTTGGAGCTCGTCGCCCTAGGTCTAATAATTCTTCACCACCCCCACAACCAAAAGGTGCAGAAGGATCCAACGGTGGAGGAGGAAGGAACAACGGATCAAGCACTCCATCAGGTAATCACGTGCAGTGGTATTATCCTGTGGGTGCACCTCCATCGCCATACCACCACCATCATCATCATCCGACCGTTCCTTTTTATGGGTACCCTACTACTCCTACCTACATTGCAACTGACATGATGAATTACAATTACAATCAGAAAATGGGCTACGGTGGGGCCTACATGAGTGGTGCCCACTTGTCTCATGTGTACCCGAGGCATGCTATGGTGGGTGCGAACACACTGATGCCAATGTACCCTCTGTATCACTATCACCATCCAACGGAGACAATGGGCGTCCCTGCTCACTACTACCATCCAACAGTGACTACTGGACACTACGCTGCTGCACTGCCAGCTGGCATCGTATCCAAGCCCGCATCCATGACTCCTCATACAGGTACAGTTGGAAGTGTTGATTGCTTTAAAGCAGTTGTCTGA 852 0.4953 MMSNNNIISNNNIGERGGGQFGDTTLTKVFVGGLAWETPKEALRQHFEKYGEILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEEQASLVINGRKANCNLASLGARRPRSNNSSPPPQPKGAEGSNGGGGRNNGSSTPSGNHVQWYYPVGAPPSPYHHHHHHPTVPFYGYPTTPTYIATDMMNYNYNQKMGYGGAYMSGAHLSHVYPRHAMVGANTLMPMYPLYHYHHPTETMGVPAHYYHPTVTTGHYAAALPAGIVSKPASMTPHTGTVGSVDCFKAVV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00480 283 MobiDBLite consensus disorder prediction 105 146 - -
Aip02g00480 283 PANTHER GEO13361P1-RELATED 17 273 - -
Aip02g00480 283 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 97 IPR000504 GO:0003723
Aip02g00480 283 MobiDBLite consensus disorder prediction 130 145 - -
Aip02g00480 283 SMART rrm1_1 28 101 IPR000504 GO:0003723
Aip02g00480 283 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 17 273 - -
Aip02g00480 283 MobiDBLite consensus disorder prediction 106 122 - -
Aip02g00480 283 SUPERFAMILY RNA-binding domain, RBD 24 135 IPR035979 GO:0003676
Aip02g00480 283 CDD RRM_RBM24_RBM38_like 27 103 - -
Aip02g00480 283 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 105 IPR000504 GO:0003723
Aip02g00480 283 Gene3D - 18 146 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00480 Aip-Chr2 6824074 6827881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00480 23 104 C2H2 Transcription Factor Family AT2G19380 45.122 4.91e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00480 - - lang:109337745 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00480 02 6824074 6827881 Aip02g00480 02 6824074 6827881 ECH