Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00445 ATGGAGAGCCTCCAAGGACCCCTCAATTCATGTTTCTTTGGTGAGTCACATTTGGAATTGAACTATTTAGAGCAACAAGGTTTGGTTTTGGATTCAGAATCAGCATTGAGGCTTGAAGAAGAAGAAGAACAAGTCTTAATGATATCAAGCTTAGAAGATAACATGCCATTCCTTCAAATGCTTCAGAGTGTGGAATATTCTCCAAACTACTCATCACAACAACAATGCTTCTTCCCTTTCAAAGATCCAACAAACTTTCAAACTCTTCTAAGGCTTCAACACTTGAAAAACCATAACAACAACAACAACAATAATAATAATGTTCAAGAACTTGATCAAAAGAGTTGTGTCACACATGATGTCATGGTAGAGATGCAACAACAACAACAACAACAACAATCACATTCACCAGTGAAATCTGAGAGCTATGAGCTTCATCAACAACACCACCAAGCTTCAGCCTCAGCTTCATGTTGTGTTGAGAATAATAATAACAACACCACACCAACAAAAGCTATTACTGCTGCTACTGAGAAGTGTGGTGGAAGAGGAAATAGCAACACTCAAGAAGTGTGCCAGAAATCCCAACAGGTGGGAAGTGTTGCCACAACAACAAGGGAGAGGAAGAAGAGGAAGAGAACAAGGCCTGCCAAGAACAAAGAAGATGTGGAGAATCAAAGAATGACTCACATTGCTGTTGAAAGAAATAGAAGGCGCCAAATGAATGATCATCTCAGTGTTCTAAGGTCCCTCATGCCCCCTTCCTATATTCAAAGGGGTGACCAAGCTTCAATCATTGGAGGTGCAATTGATTTTGTGAAGGAATTAGAGCAATTGCTTCAATCCCTTGAAGCACAAAAAAGGATGAGAAGAAAGAACAATAATAATAATAGTAGTAACAAAAATGAAGATGCTATTGGTTTTGGTTCTTCCTCTAATTCTTCTTCAACAACAAATGGTGGTTATGATGGAATAATGAGATCATCAACAACATCATTATCATTATTATCCACTGAAGAAGGAAACTTTGGTGGTGGTGGTGGTAATGGTGATGAATTAAAAGCTGAGAACAAATCAGAATCAGCAGAGATAGAAGTGACATTGATTCAAACACATGTGAACTTGAAGATTCAATGCAAAAGGAGGCATGGTCAATTGGTAAAAGCTATAGTTGCTTTGGAAGATCTTAGGCTATCAATTTTGCACCTCAACATTACTTCATCTTCTGATGATTCTGTACTCTACTCCCTCAATCTCAAGATTGAAGAAGGGTGTAGGCTAAGATCAGCAAATGAGATAGCTGAAGCAGTTCATCACATATTCAACTTCATTAATGGTTAG 1341 0.3818 MESLQGPLNSCFFGESHLELNYLEQQGLVLDSESALRLEEEEEQVLMISSLEDNMPFLQMLQSVEYSPNYSSQQQCFFPFKDPTNFQTLLRLQHLKNHNNNNNNNNNVQELDQKSCVTHDVMVEMQQQQQQQQSHSPVKSESYELHQQHHQASASASCCVENNNNNTTPTKAITAATEKCGGRGNSNTQEVCQKSQQVGSVATTTRERKKRKRTRPAKNKEDVENQRMTHIAVERNRRRQMNDHLSVLRSLMPPSYIQRGDQASIIGGAIDFVKELEQLLQSLEAQKRMRRKNNNNNSSNKNEDAIGFGSSSNSSSTTNGGYDGIMRSSTTSLSLLSTEEGNFGGGGGNGDELKAENKSESAEIEVTLIQTHVNLKIQCKRRHGQLVKAIVALEDLRLSILHLNITSSSDDSVLYSLNLKIEEGCRLRSANEIAEAVHHIFNFING 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00445 446 MobiDBLite consensus disorder prediction 182 223 - -
Aip02g00445 446 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 225 276 IPR011598 GO:0046983
Aip02g00445 446 MobiDBLite consensus disorder prediction 182 203 - -
Aip02g00445 446 MobiDBLite consensus disorder prediction 292 324 - -
Aip02g00445 446 CDD bHLH_AtFAMA_like 228 290 - -
Aip02g00445 446 SMART finulus 231 282 IPR011598 GO:0046983
Aip02g00445 446 Coils Coil 273 296 - -
Aip02g00445 446 Gene3D - 216 304 IPR036638 GO:0046983
Aip02g00445 446 MobiDBLite consensus disorder prediction 288 324 - -
Aip02g00445 446 PANTHER MAX DIMERIZATION, MAD 24 445 - -
Aip02g00445 446 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 225 293 IPR036638 GO:0046983
Aip02g00445 446 Pfam Helix-loop-helix DNA-binding domain 226 277 IPR011598 GO:0046983
Aip02g00445 446 MobiDBLite consensus disorder prediction 337 356 - -
Aip02g00445 446 PANTHER TRANSCRIPTION FACTOR BHLH70 24 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00445 Aip-Chr2 6233155 6237108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00445 218 446 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 52.838 4.56e-70 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip02g00445 HLH 4.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00445 - - adu:107473071 730.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00445 02 6233155 6237108 Aip02g00445 02 6233155 6237108 ECH