Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00442 ATGGCCAAAAGCAACGACATCACCATGGCCACGAGCAAGGAGGATGTGGGATTGCTGAACCCGAACCCGAACCCGGACAAGATGCTATCAATCCCACTGAAGAAGAGTGATCCGGTGGAGCTGTACCAGCCGTTACGCAAGTTGGTAGCAACAAAATACTCAGAGAGCGATGCAGAGAAAGTTGAAAGCGTTCTGGAAACCCTAAACAAATGTCGCAGTGACATGGTGGAGCGAGGGGACCTCTCCCTTCCCATGCAACGTGATTGCCTCATCCACTACTTCAAATGCCTCTGCATGGTTGAGCCACTCTTCACCGCTGACTCCGACGACTCCGACGGCATCATGTTTTTCTGGTACGACGCCTTCGACCCTGACTATATATGTGTGGATGGAGTCTCCTCCCATAAGACTATCCAATTGGAGAAGGCTGCTGTTCTCTACAACCTTGGCGCCATATACAGCCAGATTGGAGCCTCTTGCGACCGCACCACCGCCCTTGGCCGTCACCTTGCAATGGATGCCTTCAATGCCGCCGCCAAATTCTTCTCGGAACTCTGGAAGGTTTTCGCCAAGGACATCTCCGCCACCTTCGACTTGACTCTCGTCTTCACCGAGACGCTGCACCAGCTGTTCTCCGCTCAGGCTTCGGAGCTCAAATTACAGCAACAACTCGACGACGACAAAAGCAACAACTACGCCAGTGCCGCTTTACAAAAACATCGATGTGCCCATTTGTTTAAATCGGTTTCTAAGCATTATTGGAGAGCATATGATCTGATACTAAGTGATTCGGCTGCAACCAAACATGTCTGCTTATTTGACGAAACTTGGATACCTCATCTTCATCAGAAGCAGAAATTCTTTCGGAAAGAGGCTCGTCAGAGGAAATCATTCATCCTACCCGAACCCAAGCGACCTAAAACATCCTCATCGGTCCAATCTTGTCCTCTTGATCATGATGCAGAATCCATCACGGAAATATTAGTTAGAGGGATTTGCATGCACTCGGACCTGTGGACACCCAAGCAACAACTAATATACCTTGACCTCCTCCTCTCCGAGTACAGCCCTTTCAAGATTATGGATGGTGGAAAGCTGCTGGCTAACCCATGGGACATGCCTCCTCCTTATCCAACAAATTTTTCAGTCCTCTCTTCTTCCTCTTCGTCTTCGTCACGTCTTATGGCATTCCCTTTGAAGAAATGTGAGCCCTTGGACCTCTACGAGTCCCTGCGCAATTACTTTGTCCTCAAATACTCCGAGAGCGAGGCAAACAGAGTAGAAGGCTTTTTGAAAACGGTAGACAAGTTGCGCAGTGAAATGCAGCGTGATGACCTGTCTCTACCCGTTCGCCGCAACTGCCTCATCCAATATTTGAAATGCATTTGCATGATTGAGCCTTTGTTCCCCATGACTACCTCACCCAATCCACCTATCTTTGTTTGGTACAATGCATTCAACTCACAACAGGACTCTTCTCAGCACAACATCCATTTCGAGAAGGCCTCTGTTCTCTTCAACCTGGGAGCCCTCTCCACCCAAGTTGCTCTCTCCTGCGATCTCACCACCATCCAAGGCCATCTCCTTGCCAAGGACGCCTTAAATGATGCTTCGCATTGGTTCTTGAAACTGTCGCATGAGGCTGAGAAGGCATCTGCCACCATTGAATTGTCAGTAAACTGTGCCAAGATGCTGCGTGAGATAATATCCGCTCAGATTGCCGACTTGGACTGGAATTTTCCTCATTCCTGTTCTGTTCGATCATCATCATCTCCGGCTCCTCTGCTTTATCGGAAAGCTTATGATCTGTCGACACTTGAGCCTTTAGCTGAGAATCTTGTTCATTCCTCGATACCTCAATATCTGAAGATGAAAACCTGCCCTGTTGTAACTGATCCTGGTGATATCACTCAACAATTTCTTTCAGGGTATGGTAAGGCTAAATCCCTGCTTGTAGAGGAATGTCAACCACCATGCTTGGGCCTTCTCTCGGAGATCAGCCCGGTCAACATTAAGGATGGGAATCTTGTGGCCAATGCAACCTTAGAGGCAGTAAGCCGAGGGAGAGAGAGAGAGAGCGTGGAGTTGAGGGAGCAGAGAAGCGCGCCGCCACCTCCAGACGCCCTTGCCGCCGCCGAGGAGAAGGAGAGGAAGAGGAAGGGATGCTGTCCGCGCCCTGCCACCGCGTCAGTTCCCCGCCGCCGTGCTGCTTCGCCGTCTATGGGGAGTCGCTGCCGATCCGCCACGAGCCGCCATCGCAAGTCAACAACGAAGAGAGAGAGAGCCGCGAGGAGGAGGATCGCGCCACCCAGTCGTCGTCGTCCTCGCCGCGCCGCCGTCGAGCCCACTGAGCAGAAGCCCATCACCGCCGTTTGCACCTCTATCGCCGTCCGAGAAGCTTCCATGGCCGTTGCTGTCGAGCCCACTGAGCAGAAGCCCATCACCGCCGttctgctttcttgctttctGCGATTTATTCTTGCGATATTTTCTTACTTGATTTTCTCTTCCCTCCACGCACCTATCTACCTTTTCTGTGAGCGAGCATGTTGTTGTTGTTGTTGTTGTGGTATTTTGAGAATGGATGATGAGGTTCAAGCTTTTACCATTGCTGCTGCTCAGAACGATGACGGTGCAAGCACATCCAGAATGAAAGGGGAGCAAATCGCGAAAAACGAGGACTGTAACGGTAACGGTGGCGGTGAGGAAGTGATTAGGTGGGAGAAGATTCTGGCGCGGAGGGTGGTTAGGGTTTTGGTGGTTGAAGCTGATAACTCTACCCGCCACATCATCACTGCTATTCTTCGAAAATGCAGTTATTCAGTTATTGCTGTTTCTGATGGATTAAAGGCATGGGAAGTATTGAAGAAGAAAGCAACAGACCTAGATCTCATCTTAACAGAAGTGGATTTGCCCGCAATATCCGGATTTGCACTCATTACTTTAATCATGGAACATGATTTTTGTAAAAACATTCCTGTCATAATGATGTCTTCTCAAGATTCGGTTAACATGGTGTTGAAATGCATGCTAAAAGGTGCAGTCGATTTTCTTATAAAGCCTGTTCGGAGGAATGAGCTTAAGAACTTATGGCGGCATGTATGGAGAAGGCACGCTATTGACAAGCCCCCTCAAAATACGACATTTCCAATGGAAAAACTTAAGACTGTTTCGCAAGACAATTCTACAAGCAATCAGTCTAGTGCTTTTGTGGCTTCTTTGCAAGAAAATAATGGATGTGGTGAAAATTTGAGTGAAGCTCATAGCACTTGCACTTCGTCATTTTTGGAAGCTGAGAACGCATGCATGGAAAAACGGCAAGATGCCTCTGAACTGAAATTGAATAATGTTGATGTCGTGCACCATGAGGTGTCCATCAACCATGAAAGTAAATCAAGTAAGCATAATGATGAAATAGGTATGTGTGAGTTCCTCTCATTTTCTATAATTGGTTAA 3456 0.4826 MAKSNDITMATSKEDVGLLNPNPNPDKMLSIPLKKSDPVELYQPLRKLVATKYSESDAEKVESVLETLNKCRSDMVERGDLSLPMQRDCLIHYFKCLCMVEPLFTADSDDSDGIMFFWYDAFDPDYICVDGVSSHKTIQLEKAAVLYNLGAIYSQIGASCDRTTALGRHLAMDAFNAAAKFFSELWKVFAKDISATFDLTLVFTETLHQLFSAQASELKLQQQLDDDKSNNYASAALQKHRCAHLFKSVSKHYWRAYDLILSDSAATKHVCLFDETWIPHLHQKQKFFRKEARQRKSFILPEPKRPKTSSSVQSCPLDHDAESITEILVRGICMHSDLWTPKQQLIYLDLLLSEYSPFKIMDGGKLLANPWDMPPPYPTNFSVLSSSSSSSSRLMAFPLKKCEPLDLYESLRNYFVLKYSESEANRVEGFLKTVDKLRSEMQRDDLSLPVRRNCLIQYLKCICMIEPLFPMTTSPNPPIFVWYNAFNSQQDSSQHNIHFEKASVLFNLGALSTQVALSCDLTTIQGHLLAKDALNDASHWFLKLSHEAEKASATIELSVNCAKMLREIISAQIADLDWNFPHSCSVRSSSSPAPLLYRKAYDLSTLEPLAENLVHSSIPQYLKMKTCPVVTDPGDITQQFLSGYGKAKSLLVEECQPPCLGLLSEISPVNIKDGNLVANATLEAVSRGRERESVELREQRSAPPPPDALAAAEEKERKRKGCCPRPATASVPRRRAASPSMGSRCRSATSRHRKSTTKRERAARRRIAPPSRRRPRRAAVEPTEQKPITAVCTSIAVREASMAVAVEPTEQKPITAVLLSCFLRFILAIFSYLIFSSLHAPIYLFCERACCCCCCCGILRMDDEVQAFTIAAAQNDDGASTSRMKGEQIAKNEDCNGNGGGEEVIRWEKILARRVVRVLVVEADNSTRHIITAILRKCSYSVIAVSDGLKAWEVLKKKATDLDLILTEVDLPAISGFALITLIMEHDFCKNIPVIMMSSQDSVNMVLKCMLKGAVDFLIKPVRRNELKNLWRHVWRRHAIDKPPQNTTFPMEKLKTVSQDNSTSNQSSAFVASLQENNGCGENLSEAHSTCTSSFLEAENACMEKRQDASELKLNNVDVVHHEVSINHESKSSKHNDEIGMCEFLSFSIIG 1151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00442 1151 PANTHER PRR RESPONSE REGULATOR 902 1118 - -
Aip02g00442 1151 ProSiteProfiles BRO1 domain profile. 27 770 IPR004328 -
Aip02g00442 1151 SMART BRO1_2 27 400 IPR004328 -
Aip02g00442 1151 MobiDBLite consensus disorder prediction 747 773 - -
Aip02g00442 1151 Pfam BRO1-like domain 395 574 IPR004328 -
Aip02g00442 1151 Pfam BRO1-like domain 28 298 IPR004328 -
Aip02g00442 1151 MobiDBLite consensus disorder prediction 1 23 - -
Aip02g00442 1151 Gene3D alix/aip1 like domains 392 579 IPR038499 -
Aip02g00442 1151 Gene3D alix/aip1 like domains 26 305 IPR038499 -
Aip02g00442 1151 MobiDBLite consensus disorder prediction 1 18 - -
Aip02g00442 1151 PANTHER TWO-COMPONENT RESPONSE REGULATOR 902 1118 IPR045279 GO:0009736
Aip02g00442 1151 Pfam Response regulator receiver domain 918 1029 IPR001789 GO:0000160
Aip02g00442 1151 Gene3D - 916 1139 - -
Aip02g00442 1151 ProSiteProfiles Response regulatory domain profile. 917 1035 IPR001789 GO:0000160
Aip02g00442 1151 MobiDBLite consensus disorder prediction 685 784 - -
Aip02g00442 1151 SUPERFAMILY CheY-like 917 1043 IPR011006 -
Aip02g00442 1151 SMART REC_2 916 1031 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00442 Aip-Chr2 6154425 6167507 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00442 886 1104 Response Regulator Gene Family AT5G24470 52.703 8.34e-69 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip02g00442 BRO1 1.9e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00442 K12130 - ahf:112726525 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00442 02 6154425 6167507 Aip02g00442 02 6154425 6167507 ECH