Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00437 ATGGTGGATTGTAACAACAATACAAGGAAACACAATGATTCAAGTTCTAACAAAATATTTGTTGGAGGGTTGGCTTGGGAGACTCAAAAGGAGACACTGAGAAGATATTTTGAGCAATTTGGAGATATTATAGAGGCTGTTGTCATAACAGACAAGAACACTGGAAGGTCCAAGGGTTATGGCTTTGTCACATTCAAGGATCCAGAGGCAGCAAAGAAAGCATGCCAAAATCCATCTCCAATAATTGATGGGAGAAGGGCAAATTGTAATATTGCATCAACTGCTGCAAACAAGAAACACTCACAAACTCCTCAACATGAAAGGTTTAAACCAGTGGCTGGAATATTGGCTTCCCCTTCTCATCATCATTTTGTTCCTTCATCAACATTTTTCCATCAACCTAATGAACAATTCAGAATTCCTTATCCAACTTATAGATATAATGGATACTCACAAGAAACAATGGTCCCTATGAATTGTTATGCTATCTATGGAGGTCAACAATTCTCACCTTACTACCCTTCCAATAATGGGGCAATAGGGCCATTAGGGTTTATCCCTAATATTTACCCTTTGAATGCTCAATATGCACATAGATATCATAGTCATCAAGGTCATGGTTTTAGGGTTCAATATCCACAAATGATGCAAATTCCAGTTTTACCCCCTAGAAGACCATATGGCTCACCTGGTATCTTGACTTTTCCTCCTTCAATGCCACCACCACCAATTACTAATTCAGTGACAAGAACTGCTACTAAAAAAACAGAAGTGGCAACAAGAAAAGGTGCAAGTGCTTCAAGACCCAAAAGAACTTCTTCTATCTAA 828 0.3853 MVDCNNNTRKHNDSSSNKIFVGGLAWETQKETLRRYFEQFGDIIEAVVITDKNTGRSKGYGFVTFKDPEAAKKACQNPSPIIDGRRANCNIASTAANKKHSQTPQHERFKPVAGILASPSHHHFVPSSTFFHQPNEQFRIPYPTYRYNGYSQETMVPMNCYAIYGGQQFSPYYPSNNGAIGPLGFIPNIYPLNAQYAHRYHSHQGHGFRVQYPQMMQIPVLPPRRPYGSPGILTFPPSMPPPPITNSVTRTATKKTEVATRKGASASRPKRTSSI 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00437 275 SUPERFAMILY RNA-binding domain, RBD 10 98 IPR035979 GO:0003676
Aip02g00437 275 MobiDBLite consensus disorder prediction 235 275 - -
Aip02g00437 275 CDD RRM_RBM24_RBM38_like 18 92 - -
Aip02g00437 275 PANTHER BOULE-RELATED 5 245 IPR037366 GO:0003729
Aip02g00437 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 94 IPR000504 GO:0003723
Aip02g00437 275 SMART rrm1_1 18 90 IPR000504 GO:0003723
Aip02g00437 275 PANTHER - 5 245 - -
Aip02g00437 275 Gene3D - 3 112 IPR012677 -
Aip02g00437 275 MobiDBLite consensus disorder prediction 245 275 - -
Aip02g00437 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00437 Aip-Chr2 6114991 6118546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00437 13 93 C2H2 Transcription Factor Family AT2G19380 44.444 6.15e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00437 - - ahf:112729575 574.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00437 02 6114991 6118546 Aip02g00437 02 6114991 6118546 ECH