Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00401 ATGCCCTCCTCCGACTCCGGCGAAAGCCGTCGATCAGCCAAGCCTCACAACACTTCCCTAGCCCCACCGCCGGCCGAGCAAGAGCACCTGCCATGCCCTCCCTGCGACTCTACTAATACCAAGTTCTGCTACTACAACAACTACAACTTCTCCCAGCCTCGCCACTTCTGCAAGTCCTGCCGCCGCTACTGGACCCACGGCGGCACTCTCCGTGACATCCCCGTCGGCGGTGGAAGCCGTAAAAACGCCAAGCGCTCTCGCACCGTTCCTTCAGCCTCCACCGCCACAACCTCCTCTTCCGCGGGTGCGGCCGTCACCTCGGTTTCTTCTGTGACCCCGCTCACCATGGTTCCCGTGGCCGGGAACAACCACCCCGGAGCACCCGTGCAGTTCGATGGATGGTGA 405 0.6272 MPSSDSGESRRSAKPHNTSLAPPPAEQEHLPCPPCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTVPSASTATTSSSAGAAVTSVSSVTPLTMVPVAGNNHPGAPVQFDGW 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00401 134 PANTHER DOF ZINC FINGER PROTEIN DOF3.4 1 119 - -
Aip02g00401 134 MobiDBLite consensus disorder prediction 84 105 - -
Aip02g00401 134 MobiDBLite consensus disorder prediction 71 105 - -
Aip02g00401 134 ProSitePatterns Zinc finger Dof-type signature. 32 68 IPR003851 GO:0003677|GO:0006355
Aip02g00401 134 MobiDBLite consensus disorder prediction 1 16 - -
Aip02g00401 134 MobiDBLite consensus disorder prediction 1 32 - -
Aip02g00401 134 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 1 119 IPR045174 GO:0003700|GO:0006355
Aip02g00401 134 Pfam Dof domain, zinc finger 28 84 IPR003851 GO:0003677|GO:0006355
Aip02g00401 134 ProSiteProfiles Zinc finger Dof-type profile. 30 84 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00401 Aip-Chr2 5562806 5563210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00401 1 88 C2C2-Dof Transcription Factor Family AT3G50410 76.136 1.29e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Aip02g00401 zf-Dof 1.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00401 - - aip:107620759 228.794