Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00399 ATGGAAGAGTTGATAATTTCACCTTCTTCATCTTCATCTCTAGTTTCTACCACAACTCCATCATCATCAACAACACAAATGCTTCAACAAAACCTTCAGTTCCTTCTCCAATCGCAACCAAGCTGGTGGGTCTACGCCATCTTCTGGAGCACCACGAAGGACGACAATGGCAACCTCTACCTAGCTTGGGGTGAAGGCCATTTCCAAGGCAACACCACCAAACACACCAAAACGCAACAACAACACAACCAAAACGACGCCGAATGGTTCTACGTCATGTCGTTGACCAGAACCTTCCCCATAGCAAACTCTTCCTCTTCTTCTCTACCCGGTAAGGCTTTTGCTTTGGGTTCAGTCCTTTGGCTCAACAGCAAAGAAGAGCTTCAATTCTATAACTGCGAGAGAGCCAAAGAAGCTCACGCTCACGGCATCGAAACCTTGATCTGTATTCCAACCTCAAACGGCGTCGTTGAGATGGGTTCTTACAACACCATCCCTCAGAACTGGAACCTCATCAACCATGTCAAGTCCGTCTTCGAAGACTCCATGGTCAACAACAACAACAATAACAATAACCACTGTAGCAATTCACGAAAGCAGGCGGACGTAACCGTCCCTTTCAACAAAGAAAGCAAGGATTCGTACGCCGAGTCGGAGCACTCAGACTCCGACTGTCCTTTTCTAAAAACAGAAAATACTGAAAATAAAAACAAATTAGAAGCTCCAAAGAGCAAGAGAGGCAGGAAGCCGGTCCTCAACCGCGAAACGCCGGTGAATCACGTGGAGGCGGAGAGGCAACGGAGGGAGAAACTAAACCACCGATTCTACGCCTTGCGAGCGGTGGTTCCGAACGTTTCGAGGATGGACAAGGCTTCTTTATTGTCCGACGCCGTTGCTTACATCAACGAGTTGAAGGCGAAGATCAAAGATCTTGAATCCGAGAAAGATAACTATCAGCGCAAGAAAAAGGTGAAGCTCGAATCCGGTGATACTATGGACAATCAAAGCACGGTGACTAATTCCTCAACCGTAGTGGATCAAGAGAAATGTAGCAATGGCGTTGTTGCTGAGGTGGATGTGAAGATCATAGGGGACGATGCCATGGTTAGGGTTCAAAGTGAGAATGTGAATCACCCAGGTGCGAGACTCATGGGAGCATTGAGGGATATGGAGTTTCAAGTTCATCATGCTAGCATGACTTGTGTCAATGAATTAATGCTTCAAGATGTTGTTGGAAAAGTCCCCAGTGGAATCCTCAGAAGTGAAGAGGGTATTCGATCTGCTATTCTCATGAGGTTGGATCATATTAATTAG 1314 0.4642 MEELIISPSSSSSLVSTTTPSSSTTQMLQQNLQFLLQSQPSWWVYAIFWSTTKDDNGNLYLAWGEGHFQGNTTKHTKTQQQHNQNDAEWFYVMSLTRTFPIANSSSSSLPGKAFALGSVLWLNSKEELQFYNCERAKEAHAHGIETLICIPTSNGVVEMGSYNTIPQNWNLINHVKSVFEDSMVNNNNNNNNHCSNSRKQADVTVPFNKESKDSYAESEHSDSDCPFLKTENTENKNKLEAPKSKRGRKPVLNRETPVNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVAYINELKAKIKDLESEKDNYQRKKKVKLESGDTMDNQSTVTNSSTVVDQEKCSNGVVAEVDVKIIGDDAMVRVQSENVNHPGARLMGALRDMEFQVHHASMTCVNELMLQDVVGKVPSGILRSEEGIRSAILMRLDHIN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00399 437 MobiDBLite consensus disorder prediction 210 266 - -
Aip02g00399 437 MobiDBLite consensus disorder prediction 1 20 - -
Aip02g00399 437 CDD bHLH_AtAIB_like 254 329 - -
Aip02g00399 437 MobiDBLite consensus disorder prediction 183 202 - -
Aip02g00399 437 MobiDBLite consensus disorder prediction 212 266 - -
Aip02g00399 437 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 255 304 IPR011598 GO:0046983
Aip02g00399 437 PANTHER MYC 1 433 IPR045084 GO:0003700|GO:0006355
Aip02g00399 437 SMART finulus 261 310 IPR011598 GO:0046983
Aip02g00399 437 PANTHER TRANSCRIPTION FACTOR BHLH14 1 433 - -
Aip02g00399 437 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 255 321 IPR036638 GO:0046983
Aip02g00399 437 Coils Coil 294 328 - -
Aip02g00399 437 MobiDBLite consensus disorder prediction 323 343 - -
Aip02g00399 437 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 28 179 IPR025610 -
Aip02g00399 437 Pfam Helix-loop-helix DNA-binding domain 259 304 IPR011598 GO:0046983
Aip02g00399 437 Gene3D - 251 333 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00399 Aip-Chr2 5505448 5507261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00399 12 433 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 40.826 3.19e-85 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip02g00399 bHLH-MYC_N 4.5e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00399 - K13422 var:108347008 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00399 02 5505448 5507261 Aip02g00399 02 5505448 5507261 ECH