Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00389 ATGGAATATGCAACATATTCATCAGCAGCAGAAGTTTGTGAAGGTGTTGAAACTCCACCAGCACCAGCAGCATCATCTTCATCAATTTCATCCATGATGATTTGTAAGAAGAAGAAGAACATCAACAGCAACAATACAAGGAGGTTCAGTGATGATCAAATCAAGTCATTGGAATCAATATTTGAGACTGAGTCAAGGCTTGAGCCAAAGAAGAAGCTTCAACTTGCAAGGGAGCTTGGTTTGCAGCCAAGACAAGTTGCTATTTGGTTTCAGAACAAGAGAGCAAGGTGGAAGTCAAAGCAACTTGAGAGAGATTACACCATTCTCAGAAACAATTACAACAATTTGGCTTCAAGGTTTGAGTCACTCAAGAAGGAGAAACAAGCATTATTAATTCAGTTGCAGAAGCTGAATGATCTAATACAGAAGCCATCAATGGAGAAGAAAACTCAGAGCATAGACAGTGAATCAGAAAATGGTGACACAACAAAGAGTGGTAGTGAACTTAAGGTCAAACCAATAAGCCAATCATCAATGGCAGCAAGATCATCAGAACATGCAGTTCTTTGTGGTGGTGGTGGTGGTGGTGGTGCTCTTTCAGATGATGACACAAGCATCAAAGTTGAGTACTTTGGAAACTTGGAAGATGGGCTTGTGAATTTTGCTCATGATCATGGTGATGGGTCTTTGACATCACCAGAAGATTGGGGTCATTTTGATTCTGATGATCTTTTAGGCCAATCAACCAGTGATTACCAATGGTGGGACTTTTGGTCCTGA 780 0.4064 MEYATYSSAAEVCEGVETPPAPAASSSSISSMMICKKKKNINSNNTRRFSDDQIKSLESIFETESRLEPKKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYTILRNNYNNLASRFESLKKEKQALLIQLQKLNDLIQKPSMEKKTQSIDSESENGDTTKSGSELKVKPISQSSMAARSSEHAVLCGGGGGGGALSDDDTSIKVEYFGNLEDGLVNFAHDHGDGSLTSPEDWGHFDSDDLLGQSTSDYQWWDFWS 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00389 259 PRINTS Lambda-repressor HTH signature 71 80 IPR000047 GO:0003677
Aip02g00389 259 PRINTS Lambda-repressor HTH signature 80 96 IPR000047 GO:0003677
Aip02g00389 259 SUPERFAMILY Homeodomain-like 25 102 IPR009057 -
Aip02g00389 259 Pfam Homeobox associated leucine zipper 100 141 IPR003106 GO:0006355|GO:0043565
Aip02g00389 259 Pfam Homeodomain 47 98 IPR001356 GO:0003677
Aip02g00389 259 SMART HOX_1 43 104 IPR001356 GO:0003677
Aip02g00389 259 Coils Coil 92 140 - -
Aip02g00389 259 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 28 259 - -
Aip02g00389 259 Gene3D - 26 105 - -
Aip02g00389 259 ProSiteProfiles 'Homeobox' domain profile. 40 100 IPR001356 GO:0003677
Aip02g00389 259 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 28 259 IPR045224 GO:0003700
Aip02g00389 259 MobiDBLite consensus disorder prediction 143 170 - -
Aip02g00389 259 CDD homeodomain 47 101 IPR001356 GO:0003677
Aip02g00389 259 MobiDBLite consensus disorder prediction 149 165 - -
Aip02g00389 259 ProSitePatterns 'Homeobox' domain signature. 75 98 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00389 Aip-Chr2 5295736 5297565 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00389 12 259 Homeobox Transcription Factor Family AT2G46680 49.254 1.73e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip02g00389 Homeodomain 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00389 K09338 - gmx:100811208 284.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00389 02 5295736 5297565 Aip02g00389 02 5295736 5297565 ECH