Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00375 ATGAATGGTGTTGAGGCTGAAAAAAAACAATATAATGAGAGTGAGAAAATAATAGGGTATTATGATGATGATGTGAATGAGAAAATAGATTATGTGTTTAAGGTTGTGGTGATTGGAGATTCATCAGTGGGAAAGACTCAAATGCTCTCAAGGTTTGCAAAGAATGAGTTTTGCTTTGACTCTAAGTCAACCATTGGTGTTGAGTTCCAAACTAGGACTCTCACCATTAATGGCAAAGTCATCAAGGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGGGCAGTGACAAGTGCATATTACAGAGGAGCATTAGGGGCAATGTTGGTATATGACATAACAAAGAGAGAATCATTTGATCATGTTACAAGGTGGATTGAAGAACTAAGATCACATGCAGATAGCTCCATTGTGATCATGTTAATTGGTAACAAATGTGACCTTGTTGACCTAAGAATGGTGTCAACTGAAGATGCAATTGAATTTGCTGAAGAACAAGGCCTTTTCTTCTCTGAGACTTCAGCACTCAATGGTAACAATGTGGAAAGTGCTTTTCTTAAATTGCTTCAAGAGATTCATAATAGGGTTGTTTCTAAGAAGAAAAGTTTGGAATGTGGTAGTGGTGATGATGACATTATTGGTAATGGTGATAAACCAACAATAACTGTTAGACGTTCTACTGATGATGAACTTGGTCCTTTCACTAGACCTCCTGTTGATGGGGAAGATGTACAAGTTGATAATGTCGGTGATGATTTGCATGATGAACCTATACCTCAATCTGAGGTGCCAGATGCAGAAGTTTCACCAGATGTTGAAATCTCCCCTAAACTACCAGTTAAGCCTGAATTGagaagattactagagagcatcattcttctcagagatactctcctcatgaCAGAGGAGCTTCTTAAAGATCCGTTCCTGCAAGTTGAGAATGGTCCTAGGCTAGGTCGTAGCAGGTCTCGCCTATCCATGGACATAGATAATGAGGGCAGACAGAATTATGCAAGCAGTGATGCCGGAAGCAACAAAGGCGGTGTGCATAGTCCTGTTTTCGAAGTTAAGAGGACAAATAAGAACAACGAGTTTAGGTTGACAGGAGCCAAAAATGATGATAACTCGATATCATTGACCTTGCGAATTGCTGATACTAATGGTGGAGTAAGGAATATACATTTTCTCTTCTACTTTGATACAGATACTGCTCTCGCGGTGGCATCAAAGATGGTCGAACATTTGGAGCTTGCAGATCATGATGTAGCCTTCATAATTGACCTTATCGATTACTTGGTCTTCTGCGTTCGCCAACTTCTATGTCGTGTGTCTCCTCCGTTGGCATCTCATCGTTCGTGCACCTTCACCGCTGTTGCTTTGCCTAAACCCACTCTCCGTCGTCCTTGCACCTTCACTGTTGTCTCCTCAGCGTCACCTCATCGGAATGGCTTTGCGGTGGTTCGCTTCCCTCCTTGTGGTCAAGCATAG 1491 0.4051 MNGVEAEKKQYNESEKIIGYYDDDVNEKIDYVFKVVVIGDSSVGKTQMLSRFAKNEFCFDSKSTIGVEFQTRTLTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRESFDHVTRWIEELRSHADSSIVIMLIGNKCDLVDLRMVSTEDAIEFAEEQGLFFSETSALNGNNVESAFLKLLQEIHNRVVSKKKSLECGSGDDDIIGNGDKPTITVRRSTDDELGPFTRPPVDGEDVQVDNVGDDLHDEPIPQSEVPDAEVSPDVEISPKLPVKPELRRLLESIILLRDTLLMTEELLKDPFLQVENGPRLGRSRSRLSMDIDNEGRQNYASSDAGSNKGGVHSPVFEVKRTNKNNEFRLTGAKNDDNSISLTLRIADTNGGVRNIHFLFYFDTDTALAVASKMVEHLELADHDVAFIIDLIDYLVFCVRQLLCRVSPPLASHRSCTFTAVALPKPTLRRPCTFTVVSSASPHRNGFAVVRFPPCGQA 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00375 496 PRINTS Transforming protein P21 ras signature 171 193 - -
Aip02g00375 496 PRINTS Transforming protein P21 ras signature 33 54 - -
Aip02g00375 496 PRINTS Transforming protein P21 ras signature 74 96 - -
Aip02g00375 496 PRINTS Transforming protein P21 ras signature 136 149 - -
Aip02g00375 496 PRINTS Transforming protein P21 ras signature 56 72 - -
Aip02g00375 496 ProSiteProfiles small GTPase Ras family profile. 27 294 IPR001806 GO:0003924|GO:0005525
Aip02g00375 496 Gene3D - 25 210 IPR027417 -
Aip02g00375 496 SMART ran_sub_2 38 245 - -
Aip02g00375 496 SMART rab_sub_5 33 196 - -
Aip02g00375 496 ProSiteProfiles small GTPase Rab1 family profile. 28 246 - -
Aip02g00375 496 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 204 IPR027417 -
Aip02g00375 496 ProSiteProfiles small GTPase Rho family profile. 26 198 - -
Aip02g00375 496 SMART rho_sub_3 35 192 IPR001806 GO:0003924|GO:0005525
Aip02g00375 496 TIGRFAM small_GTP: small GTP-binding protein domain 32 186 IPR005225 GO:0005525
Aip02g00375 496 CDD Rab11_like 30 194 - -
Aip02g00375 496 Pfam Ras family 34 194 IPR001806 GO:0003924|GO:0005525
Aip02g00375 496 PANTHER - 22 213 - -
Aip02g00375 496 PANTHER RAS-RELATED PROTEIN RABA3 22 213 - -
Aip02g00375 496 SMART ras_sub_4 30 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00375 Aip-Chr2 5013971 5024811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00375 283 434 MAP Kinase Kinase Kinase AT1G49160 38.122 3.75e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00375 K07904 - gmx:100799439 341.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00375 02 5013971 5024811 Aip02g00375 02 5013971 5024811 ECH
Aip06g01269 06 19063235 19064911 Aip02g00375 02 5013971 5024811 PCT