Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00373 ATGCATTTCATAGTTATTTATGTCTCTAATACTAGTTCCGTTGCAGGTTTTGCTTTTGTCTATTATGAGGATGAGCGTGATGCTGAAGAAGCAATTCGTGCACTTGACAATTTTCCGTTTGGCTATGAAAAGCGAAGGCTTTCTGTTGAATGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGGCTCAAGGGCAAACCAGAAGCCCACAAAAACCCTATTTGTGATCAACTTTGACCCAATTCGTACTAGAGTTCGTGATATAGAAAAGCACTTTGAACCTTATGGGAAGGTTCTTCATGTCCGAATTCGTAGGAACTTTGCATTCGTGCAGTTTGAAACACAAGAAGATGCTACGAAAGCTCTTGAGTGTACGAATATGAGTAAGATACTGGACAGGGTGGTGTCTGTGGAGTATGCACTGAGGGATGATGGTGATAGGGGTGACAATTATGACAGTCCGAGACGAGGTGGTTATGACAGATCACCGAGTCCGGCCTATCGCAGGCGGCCAAGTCCTGACTACGGTCATCCACGCAGCCCTGTGTATGATAGATATAATGGACCAGACAGGCGTAGGAGTCCCGATTACGGCAGGCAGAGGAGCCCAGATTATGGCAGATACCGCAGCCGTTCACCAGTTCGAAGGTCAAGGACTTAG 660 0.4697 MHFIVIYVSNTSSVAGFAFVYYEDERDAEEAIRALDNFPFGYEKRRLSVEWARGERGRHRDGSRANQKPTKTLFVINFDPIRTRVRDIEKHFEPYGKVLHVRIRRNFAFVQFETQEDATKALECTNMSKILDRVVSVEYALRDDGDRGDNYDSPRRGGYDRSPSPAYRRRPSPDYGHPRSPVYDRYNGPDRRRSPDYGRQRSPDYGRYRSRSPVRRSRT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00373 219 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 8 182 IPR029537 GO:0000398|GO:0005681
Aip02g00373 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 142 IPR000504 GO:0003723
Aip02g00373 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 54 IPR000504 GO:0003723
Aip02g00373 219 SMART rrm1_1 72 138 IPR000504 GO:0003723
Aip02g00373 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 40 IPR000504 GO:0003723
Aip02g00373 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 135 IPR000504 GO:0003723
Aip02g00373 219 MobiDBLite consensus disorder prediction 143 219 - -
Aip02g00373 219 SUPERFAMILY RNA-binding domain, RBD 9 144 IPR035979 GO:0003676
Aip02g00373 219 Gene3D - 3 64 IPR012677 -
Aip02g00373 219 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 8 182 - -
Aip02g00373 219 MobiDBLite consensus disorder prediction 184 211 - -
Aip02g00373 219 Gene3D - 65 150 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00373 Aip-Chr2 5000307 5003066 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00373 6 133 Eukaryotic Initiation Factors Gene Family AT4G34110 26.667 7.78e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00373 K12893 - gmx:100797709 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00373 02 5000307 5003066 Aip02g00373 02 5000307 5003066 ECH