Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00347 ATGAAGTTTGAGGTGGGTTCAGGTGGTTGCGGCGGCAGAGGTGGCGGTGGCGGTAGCGGCGGTTGGAATTGGAACGATGATGAAGAAGAAGAAAAATCCATGGTGATGAAAATTCTCGGAAAACGTGCTTTTGATTACTTGGCTTCAAACTCCTTCATCACCAATGAGAGCATGTTAATGGCAACAGGGAGTTTCGAGAATCTTCAGAACAAGCTCTCTGATCTTGTTGAACGCCCCAACTTAAACCATTTCAGTTGGAACTACGCGATCTTCTGGCAGTTTTCACAGTCCAAATTCAAAAAAGATTGTGTTGTTCTTGGTTGGGGTGATGGCTGTTGCAGAGAACCAATCGAAGGTGAAGAAGAAAGAGAAGCTTTGAGACTTGGATTTGATGATGATGAAGTTGTTCAGAGAATGAGGAAGAGGGTGTTGCAGAAGCTTCACACGATTTTTAATGGTTCTGAAGAGGAAAATGAAAATTACGCTTTTGGCCTTGACCGTGTAACTGACACTGAGATGTTCTTCCTTGCTTCCATGTACTTCTCTTTCCCCAAAGGTTATGGTGGTCCAGGTAAGTGCTTTGAACTTGGTAAGCACTTGTGGATTTGTAATGATGATGATGCTGATGATAGAGATGGTGATCATGGGTTTTTGAATTGTGATTCTGGTTATTGTGTGAGGGCATTTTTGGCAAAATCAGCTGGGATTAAAACTGTTGTTTTGGTTCCAACTGAATTAGGTGTTGTTGAATTAGGTTCTGTGAGGATTGTTGATGAGAACCTTGATTTGTTAAAAGCTGTGTACTCTGTATTTTCTTCTTCTTTTGCTCACTCATCATCATTCAATGATGTTGTAAATGTCAAGGGAGATGAAAAAAATAGATTTTTTTGTGGTTTGAATGTTGGGGATTGGGATAGGGATAGAGATATTAGGGTTAGGGATCTTGAGGGTGTTCCGGTTCCAAAGATTTTTGGGAAAGAATTGAATGTTGGGAATTTGAATTCAGGGGGAAAGAATTTTAGGGAGAAAGTTGTTGTTAGGAAAATTGAAGAGAAGAAATCATGGAATGGTTACCCTAATGGGAATAATGGAATTCGGTTTCCTAATAATGCTAGGAATGGTGTTAATGGTTCAAGTTGGGCAGTTAATCAAGGTTTGAGTCAGGGCTGCCTTGGAGGAGTTTTCCCTCCTATTCCTAGATCCTGCCTTAGTAATATGGCAAAGCAAGCCGATTGCGGCGGGAAGAAAGATTCCTTGTTGGAAAAGTTTCAACGGCCGCCACAAGGGCAAGTGCCGATGCAAATTGATTTTGGAGTAGGATCACAGTCTTTTGGGAGATCAATCGTTGGCGAATGTGAGATTTCAAATAGCGACTCATTGCATAAAGAAGAGAAACCGAGCGCGACTCAAGAAAAGAGGCCGAAAAAGCGAGGTAGGAAGCCTGCTAATGGAAGGGAAGAGCCCCTCAATCATGTGGAGGCGGAGAGGCAAAGGCGCGAGAAACTAAACCAACGTTTCTATGCGTTGCGCGCTGTTGTACCTAATATCTCGAAGATGGATAAGGCGTCTTTGTTGGGAGACGCCATAGCTCACATCAATGAGCTACAGGCGAAATTAAAGGCCTTGGAATACGAAAAATCAACCCTGAAAAGTACTTCCAAGGCTAATTTATCAGGAATTGAGGCCAATCTTCGAGATAGAACTTGTTCTTTCAAGGTGGATATCGAAGCGGATCAAGATGGTGTGATTGTGAAAGTGAGTTGCCCTATTGAACTTCATCCTACATCAAAATTGATCCAAGCGTTAAAAGATTCAGAAATGAGTATTTTGGAGTCCACATTTAATGCTACAAATGATCATGTCTTCCACACATTCGTGATTAAGTCCCATGCATCGGAACAACTCACAAAAGAGAAGGTGATCGCGGCGATTTCTGGTGAATCCAACTCAAGAAAACTCATATTCGCATAG 1971 0.4206 MKFEVGSGGCGGRGGGGGSGGWNWNDDEEEEKSMVMKILGKRAFDYLASNSFITNESMLMATGSFENLQNKLSDLVERPNLNHFSWNYAIFWQFSQSKFKKDCVVLGWGDGCCREPIEGEEEREALRLGFDDDEVVQRMRKRVLQKLHTIFNGSEEENENYAFGLDRVTDTEMFFLASMYFSFPKGYGGPGKCFELGKHLWICNDDDADDRDGDHGFLNCDSGYCVRAFLAKSAGIKTVVLVPTELGVVELGSVRIVDENLDLLKAVYSVFSSSFAHSSSFNDVVNVKGDEKNRFFCGLNVGDWDRDRDIRVRDLEGVPVPKIFGKELNVGNLNSGGKNFREKVVVRKIEEKKSWNGYPNGNNGIRFPNNARNGVNGSSWAVNQGLSQGCLGGVFPPIPRSCLSNMAKQADCGGKKDSLLEKFQRPPQGQVPMQIDFGVGSQSFGRSIVGECEISNSDSLHKEEKPSATQEKRPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAHINELQAKLKALEYEKSTLKSTSKANLSGIEANLRDRTCSFKVDIEADQDGVIVKVSCPIELHPTSKLIQALKDSEMSILESTFNATNDHVFHTFVIKSHASEQLTKEKVIAAISGESNSRKLIFA 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00347 656 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 68 271 IPR025610 -
Aip02g00347 656 MobiDBLite consensus disorder prediction 480 497 - -
Aip02g00347 656 MobiDBLite consensus disorder prediction 456 471 - -
Aip02g00347 656 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 489 552 IPR036638 GO:0046983
Aip02g00347 656 PANTHER MYC 28 649 IPR045084 GO:0003700|GO:0006355
Aip02g00347 656 MobiDBLite consensus disorder prediction 455 497 - -
Aip02g00347 656 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 28 649 - -
Aip02g00347 656 Coils Coil 525 552 - -
Aip02g00347 656 MobiDBLite consensus disorder prediction 1 26 - -
Aip02g00347 656 SMART finulus 492 541 IPR011598 GO:0046983
Aip02g00347 656 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 486 535 IPR011598 GO:0046983
Aip02g00347 656 CDD bHLH_AtAIB_like 483 553 - -
Aip02g00347 656 Pfam Helix-loop-helix DNA-binding domain 490 536 IPR011598 GO:0046983
Aip02g00347 656 Gene3D - 479 552 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00347 Aip-Chr2 4630700 4633074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00347 24 647 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 43.846 3.08e-155 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip02g00347 bHLH-MYC_N 7.6e-49 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00347 - - aip:107623716 1243.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00347 02 4630700 4633074 Aip02g00347 02 4630700 4633074 ECH
Aip06g01244 06 18481870 18483861 Aip02g00347 02 4630700 4633074 PCT