Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00338 ATGATTTCAGCTATTTCGTGGATACCGATTGGTGCTTCGAAGGCAGAACCCACCGTAGCTGAACCTCCTTCCAAGGAAGAAATTCAAGATATAATCACCACCGCCGCCGCCAGTACAGCAGACAGTGAAAATGAGGAAGAAGCAGGGGATGAACGCATGGATGATGCCGGTGGCGCCGTCGATGAAGTTGCGCGAGCACTCAATGTTGCTGATGCTCTCGGGAAGGCTGATAAATTGGACGATATTGCCCTCGGTTTGAAGGAGCTTGACATGGAACATTACGATGATGAAGATGAAGGAGTTGAGGTATTTAGTTCCGGGATTGGTGATCTTTATTATCCAAGTAACGACCTGGATCCTTATATCAAAGATAAGAACGATGATGATGACTCTGAGGAACTCGAAGACATGATCATTAATCCAACTGATTCCGTCATTGTTTGTGCTCGTACTGAGGACGATCTCAGTCTTCTCGAGGTTCATATACTTGAGGACGTCGGTACTAGTGAGATGAACATGTATGTCCATCATGATATCATAATTCCTGCATTTCCACTATCCACAGCTTGGCTTGACTGCCTTCAAGGAAGAGAGAAAGGAAACTTCTTAGCTGTTGGTTCAATGGAACCGTCAATAGAAATTTGGGACCTTGATGTTATTGATGCAGTGCAGCCATGCATGGTTTTAGGTGGCATTTCAGAGAAAAAGAAGAAGGGGAAGAAGAAATCAATCAAATACAAAGATGACAGTCACACTGACTCTGTACTTGGTCTTGCCTGGAACAAAAAGTTCAGGAATGTACTTGCTAGTGCCAGTGCTGACAAGCGAGTCAAGATTTGGGATGTGGCTACTGGGAAGTGTGAGAGTACAATGGAGCATCACTCAGACAAGGCAAGTACAGTTGCTTGGAATCATCATGAACCAAAATTTCTTCTTAGTGGTTCATTTGATCATACTGTGGTCCTGAGGGATGGAAGGACGCCATCCCATCCTGGTTATAAGTGGTCAGTCACAGCTGATGTCGAGAGCTTGGCCTGGGATCCACACACTAACCACGATTTTGTGGTGAGTCTCGAGGATGGTACTGTCAAGTGTTTTGATGTTCGGACCGCAACGTCTGAATCCACATCTGATCTAAGTTCTACATTTACTCTTCATGCACATGACAAAGCTGTTACCTCAGTATCCTATAATGTGTCAGCACCTAATCTACTTGCTACTGGATCGATGGACAAAACGGTAAAGCTTTGGGATTTATCGAACAACCAACCATCTGTTGTGGCATCTAAAAACTCCAATGCTGGAGCTGTATTTTCTATTTCGTTTTCAGAGGACAACCCCTTTGTGTTGGCTATAGGAGGCTCAGAGGGAAAATTGCAAGTTTGGGACACTTTATCTGAGTCTGCTGTCTCTCGGCGTTATGAAAATTACAAGAAGAATAGAACTCGGTCGTGA 1455 0.444 MISAISWIPIGASKAEPTVAEPPSKEEIQDIITTAAASTADSENEEEAGDERMDDAGGAVDEVARALNVADALGKADKLDDIALGLKELDMEHYDDEDEGVEVFSSGIGDLYYPSNDLDPYIKDKNDDDDSEELEDMIINPTDSVIVCARTEDDLSLLEVHILEDVGTSEMNMYVHHDIIIPAFPLSTAWLDCLQGREKGNFLAVGSMEPSIEIWDLDVIDAVQPCMVLGGISEKKKKGKKKSIKYKDDSHTDSVLGLAWNKKFRNVLASASADKRVKIWDVATGKCESTMEHHSDKASTVAWNHHEPKFLLSGSFDHTVVLRDGRTPSHPGYKWSVTADVESLAWDPHTNHDFVVSLEDGTVKCFDVRTATSESTSDLSSTFTLHAHDKAVTSVSYNVSAPNLLATGSMDKTVKLWDLSNNQPSVVASKNSNAGAVFSISFSEDNPFVLAIGGSEGKLQVWDTLSESAVSRRYENYKKNRTRS 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00338 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 290 IPR001680 GO:0005515
Aip02g00338 484 SMART WD40_4 328 367 IPR001680 GO:0005515
Aip02g00338 484 SMART WD40_4 239 281 IPR001680 GO:0005515
Aip02g00338 484 SMART WD40_4 378 418 IPR001680 GO:0005515
Aip02g00338 484 SMART WD40_4 284 324 IPR001680 GO:0005515
Aip02g00338 484 SMART WD40_4 423 463 IPR001680 GO:0005515
Aip02g00338 484 SMART WD40_4 177 216 IPR001680 GO:0005515
Aip02g00338 484 MobiDBLite consensus disorder prediction 36 57 - -
Aip02g00338 484 Gene3D - 335 480 IPR015943 GO:0005515
Aip02g00338 484 Gene3D - 86 331 IPR015943 GO:0005515
Aip02g00338 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 385 427 IPR001680 GO:0005515
Aip02g00338 484 SUPERFAMILY WD40 repeat-like 199 469 IPR036322 GO:0005515
Aip02g00338 484 Pfam Anaphase-promoting complex subunit 4 WD40 domain 247 305 IPR024977 -
Aip02g00338 484 PRINTS G protein beta WD-40 repeat signature 268 282 IPR020472 -
Aip02g00338 484 PRINTS G protein beta WD-40 repeat signature 450 464 IPR020472 -
Aip02g00338 484 PRINTS G protein beta WD-40 repeat signature 405 419 IPR020472 -
Aip02g00338 484 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 476 - -
Aip02g00338 484 ProSiteProfiles Trp-Asp (WD) repeats profile. 430 472 IPR001680 GO:0005515
Aip02g00338 484 ProSitePatterns Trp-Asp (WD) repeats signature. 268 282 IPR019775 -
Aip02g00338 484 PANTHER PERIODIC TRYPTOPHAN PROTEIN 1 1 476 IPR044285 GO:0006364
Aip02g00338 484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 286 - -
Aip02g00338 484 Pfam WD domain, G-beta repeat 382 418 IPR001680 GO:0005515
Aip02g00338 484 ProSitePatterns Trp-Asp (WD) repeats signature. 405 419 IPR019775 -
Aip02g00338 484 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 385 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00338 Aip-Chr2 4551095 4554486 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00338 265 478 U-box Gene Family AT2G33340 30.045 2.97e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00338 K14791 - gmx:100807947 696.427