Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00330 ATGGCACCGCGTGACGGCGGCGGAGATGGGACTCGGCCGCCATTGTTGCGGTCTACACGGGGCCGCCATCAGTCCTTGCCGTCGAGGTTCAATGACTCGGTTCTTGATTCATGGAAGAACCAAGGAGTCAAAGTGGAGGACACGGATTCCAGCTTTGAGGATGATGCAGAAGAAGAGAAGAAAAAGAAGGGTGATAATTATTGTCGTCTTGAAGTGAATATAGAGATGGAAAAGAATGGTTTTGTTAAAACTGAGAGTAACAGTTCTGTGCTTAGTTTTGAGGGTGGTGTGGAGCAGAAGGTTAAAACTACTGCGAATGGTGGTGAAAGGAGGAAACAGGTTTACAGGCCGGAGGATTTCGCGTTGGGTGATATAGTTTGGGCGAAGTGTGGGAAGAGGTACCCTGCTTGGCCTGCTGTGGTGATTGATCCTATCTTGCAGGCTCCGAAATCCGTCCTCAGCTGCTGCGTTCCTGGTGCACTCTGCGTCATGTTCTTTGGCTTTTCGAAAAATGGGACCCAAAGGGACTATGCTTGGGTGAAGCAGGGAATGATATTCCCTTTCTCTAAGTTCATGGAAAGATTCCAGGGTCAGACACAGTTGTACAAGAGCAAACCGAGTGACTTTCGCATGGCATTGGAGGAGGCAATGCTGGCTGTAGATGGTCTTCTCAACTCACAGCTGGAAGTAGAGGAAGTAACTTATGTAAATGCTTATCCGAATGGACATTTAGAGGCCCCAGCCATGCCTGTTGATGATGAATACCACTGCGAGGATCAAGATACAATATCTTGTGCTGGCTGTTATTTGATGTTGCCATGCAAAACGATGAAGAAGATTAAGGACCCAAGTGGTGCATCTCAATTTTATTGCAAACATTGCTTTAAGTTACGAAAATCAAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCACATGGTGGGAATTGGGTGTGCTGTGATCGCTGTAATGTTTGGGTGCATGCTGAGTGCGATAAAATATCCATTGAACTTTTCAAGGATCTTGAAAACACAGATTACTATTGCCCAGCGTGCAAGGGAAATTTCAATAAGAAAGTACCCATACCCAAAACAAGCAAGTCAAAAAAGAAGTATAATGTGGAAGACAGATTGGTAGAGAATAGCCAAAAATCTATAGTACCTGAGACGGTAACAGTGGTGTGCAATGGCATGGAAGGACTCTACTTCCCAAAGCTTCATTTAATTATGTGCAAGTGTAGCTCTTGTGGTTCAAGGAAGCAGACACCAAGTGAATGGGAAAGGCACACAGGTAGCAGAGCCAAAAAATGGAAACATAGTGTGAAAGTGAAAAGCATGATGCTCCCACTAGAAAAATGGATCACAGAAAACATTTCACAAGATGGAGTTCCACAGCAGTTAGATCAGCAGCAGGTGCTTAGCTTTTTGCAAGAAAATTATGAGCCAGTTCATGCAAAATGGACAACAGAAAGATGTGCAGTTTGCAGATGGGTAGAAGATTGGGAAGATAATAAAATTATTATTTGTAACAGGTGCCAAATAGCAGTCCACCAAGAATGCTATGGGGCAAAGAATGTTCAAGATTTTACTTCTTGGGTTTGTAGAGTATGTGAAACACCAGATGTGGAGAGAGATTGTTGCCTCTGTCCTGTAAAAGGTGGTGCTCTAAAACCAACTGATGTTGAGATGCTATGGGTTCATGTGACATGTGCTTGGTTTCAACCTCAAGTGGTTTTCCAAAATCATGAGGCCATGGAACCTGCGGTAGGAATACTGAGAATTCCTCCTAATACCTTTGTTAAGACCTGTGTGATCTGTAAACAAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTGATGTGTGCTTCGAGAGCGGGATATAGCACAGAATTGCATTCTGTGGAGAAGAATGGGACTCAAATAACAAAGAAGCTAATATACTGTGCAGTTCACAGGGTCCCAAATCCAGAATCTGTATTGGTTGTACATACTCCCCTGGGGGTTTTCTCTCCCAGAGCCTCTCTTGAAAATCATAGAAGATGCTTCCGGGGGTCAAGGCTGGTTTCATCAAAGAATGTAGAGCTTATTCAATCTTCAAACTCTGAAGGTGACAAGATTGAGCCATTTTCTGCTGCAAGATGTCATGTATACCGTAGATCACTGAATAAGAAGGCTGAAATACCAATAATTCACTTGCTGAAGGGACCCGGCCATCATTCTTTAAGTGCAATAACTCAGTTGAACAGCCATAAGGATGCTGAAGATTCTAAAGTATTTACTTCTTTCAAGGAACGACTTCATCATTTACAGAAAATGGAAAAGCTTCGAATTTGCTTTGGAAAATCGGGTATCCATGGATGGGGTCTTTTTGCTCGTAGAGATATACAAGAAGGAGAGATGGTTGTTGAGTATCGCGGTGAGCGGGTAAGGCGAAGTGTTGCTGATTTAAGGGAAGTGAAATACCGTGCAGAAGGAAAAGATTGCTATCTGTTCAAGATCAGCGAGGATGTGGTAATTGATGCAACGTACAAGGGCAATATAGCACGGCTAATAAACCATTCTATGAAGTATTGA 2598 0.4311 MAPRDGGGDGTRPPLLRSTRGRHQSLPSRFNDSVLDSWKNQGVKVEDTDSSFEDDAEEEKKKKGDNYCRLEVNIEMEKNGFVKTESNSSVLSFEGGVEQKVKTTANGGERRKQVYRPEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCVPGALCVMFFGFSKNGTQRDYAWVKQGMIFPFSKFMERFQGQTQLYKSKPSDFRMALEEAMLAVDGLLNSQLEVEEVTYVNAYPNGHLEAPAMPVDDEYHCEDQDTISCAGCYLMLPCKTMKKIKDPSGASQFYCKHCFKLRKSKQYCGICKKIWHHSHGGNWVCCDRCNVWVHAECDKISIELFKDLENTDYYCPACKGNFNKKVPIPKTSKSKKKYNVEDRLVENSQKSIVPETVTVVCNGMEGLYFPKLHLIMCKCSSCGSRKQTPSEWERHTGSRAKKWKHSVKVKSMMLPLEKWITENISQDGVPQQLDQQQVLSFLQENYEPVHAKWTTERCAVCRWVEDWEDNKIIICNRCQIAVHQECYGAKNVQDFTSWVCRVCETPDVERDCCLCPVKGGALKPTDVEMLWVHVTCAWFQPQVVFQNHEAMEPAVGILRIPPNTFVKTCVICKQSHGSCTSCCKCATYFHVMCASRAGYSTELHSVEKNGTQITKKLIYCAVHRVPNPESVLVVHTPLGVFSPRASLENHRRCFRGSRLVSSKNVELIQSSNSEGDKIEPFSAARCHVYRRSLNKKAEIPIIHLLKGPGHHSLSAITQLNSHKDAEDSKVFTSFKERLHHLQKMEKLRICFGKSGIHGWGLFARRDIQEGEMVVEYRGERVRRSVADLREVKYRAEGKDCYLFKISEDVVIDATYKGNIARLINHSMKY 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00330 865 Gene3D - 109 229 - -
Aip02g00330 865 Gene3D - 384 470 IPR010919 -
Aip02g00330 865 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 61 862 - -
Aip02g00330 865 ProSiteProfiles PWWP domain profile. 122 191 IPR000313 -
Aip02g00330 865 MobiDBLite consensus disorder prediction 1 33 - -
Aip02g00330 865 ProSiteProfiles Zinc finger PHD-type profile. 491 542 IPR019787 -
Aip02g00330 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 543 661 IPR013083 -
Aip02g00330 865 Pfam PHD-finger 506 540 - -
Aip02g00330 865 SUPERFAMILY FYVE/PHD zinc finger 301 363 IPR011011 -
Aip02g00330 865 ProSitePatterns Zinc finger PHD-type signature. 494 539 IPR019786 -
Aip02g00330 865 SUPERFAMILY SET domain 777 863 IPR046341 -
Aip02g00330 865 ProSiteProfiles Zinc finger PHD-type profile. 301 357 IPR019787 -
Aip02g00330 865 SMART PWWP_4 120 189 IPR000313 -
Aip02g00330 865 SMART PHD_3 493 540 IPR001965 -
Aip02g00330 865 SMART PHD_3 303 355 IPR001965 -
Aip02g00330 865 SMART PHD_3 604 660 IPR001965 -
Aip02g00330 865 Pfam PHD-finger 303 355 IPR019787 -
Aip02g00330 865 Pfam PHD-zinc-finger like domain 547 659 - -
Aip02g00330 865 ProSiteProfiles SET domain profile. 783 865 IPR001214 GO:0005515
Aip02g00330 865 Gene3D SET domain 705 864 IPR046341 -
Aip02g00330 865 SUPERFAMILY FYVE/PHD zinc finger 491 556 IPR011011 -
Aip02g00330 865 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 862 IPR025780 -
Aip02g00330 865 ProSiteProfiles Extended PHD (ePHD) domain profile. 545 660 IPR034732 -
Aip02g00330 865 Pfam PWWP domain 123 219 IPR000313 -
Aip02g00330 865 PANTHER PHD FINGER PROTEINS 61 862 - -
Aip02g00330 865 Pfam SET domain 794 862 IPR001214 GO:0005515
Aip02g00330 865 SUPERFAMILY SAND domain-like 391 451 IPR010919 -
Aip02g00330 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 361 IPR013083 -
Aip02g00330 865 CDD PHD_TCF19_like 304 354 - -
Aip02g00330 865 CDD PHD_ATX3_4_5_like 493 539 IPR042011 -
Aip02g00330 865 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 482 542 IPR013083 -
Aip02g00330 865 SUPERFAMILY Tudor/PWWP/MBT 114 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00330 Aip-Chr2 4456087 4463767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00330 494 646 C2H2 Transcription Factor Family AT3G14740 33.750 1.51e-19 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aip02g00330 zf-HC5HC2H_2 2.2e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00330 - - gmx:100793624 1356.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00330 02 4456087 4463767 Aip02g00330 02 4456087 4463767 ECH