Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00328 ATGGGAACCCTAACGAAGAAGATTCTTTCTCTTTTCTTCATCTACCCTGTAATATTAGCTTCTGACTGCGAATTTTCTTGGTGTGAAAGCATGCTCATTCGTTTCCCCTTTCAACTTCAAAGCAACCAGCTTCAACATCCTTATTGTGGTTACCCTGGTTTCAAATTAATCTGCACCAATGACGCCAAAACAGTTCTAGATCTTCCATTCTCTGGAGAATTCTATGTACGCAACATAAACTATCTAACACAGCAGATACAAGTCTATGACCCTGATCAGTGCCTTCCAAAACGTCTTCTAAGCCTCAATCTTTCGGGTACCCCCTTCATTGCCATGTTGAGTCGCAACTACACTTTCTTAAGCTGCAATTCTCGCAACGCAGCGTCGCGGTCCGTTCCCATTGATTGTCTTAGCAATTCAACATATTTTGTATCTGCTGTGCCTTCAGGGGACTTGGCCAATAATTCATTGCCAGTTTCATGCAAAGTTATTGGAAGGCTTTCAGTTCCATTTTCAAGCACAACAGTTGTGAGAAATCTTGGTGATGATCTTATCCAAGATCTTCAATTAACATGGAATAAACCTGATTGCAGAGTATGTGAATCACAAGGAAAATTGTGTCAATTTGAGAACAATACCAGTGATAGAATTCGTTGCTCCGATGATTACAATACAGGTGGTACATCAAAGGGACTTTTAGCCTTCAGAATAATCACATTATGCATAATTGGACCAGCTTGTATCTTTGCTGTTGTGTTAGCATGCTGTGTGTACTACAGAGATAGAGTTTCCAATGCTAATGCTGCAAGGAGAGCACTACAATTAGCAGCAATAACACCACATCCTCCTGAACCTCCCATTACCACAACTTTGGGATTGGATGAAACTACAATTGACTCTTATGAGAAGCTTGTGCTGGGTGAGAGTAAGAGGGTGCCAGGACCCAATAATGGAACATGTTGGATATGCTTGGCAGAGTACAACTCCAAAGAGACCATTAGATGCATCCCTGAATGCAAACATTGCTTCCATTCAGATTGCATTGATGAGTGGCTTAGAATGAATTCAACATGCCCAGTTTGCAGGAACACTCCAACTCCATCCCCTTCATGA 1113 0.4151 MGTLTKKILSLFFIYPVILASDCEFSWCESMLIRFPFQLQSNQLQHPYCGYPGFKLICTNDAKTVLDLPFSGEFYVRNINYLTQQIQVYDPDQCLPKRLLSLNLSGTPFIAMLSRNYTFLSCNSRNAASRSVPIDCLSNSTYFVSAVPSGDLANNSLPVSCKVIGRLSVPFSSTTVVRNLGDDLIQDLQLTWNKPDCRVCESQGKLCQFENNTSDRIRCSDDYNTGGTSKGLLAFRIITLCIIGPACIFAVVLACCVYYRDRVSNANAARRALQLAAITPHPPEPPITTTLGLDETTIDSYEKLVLGESKRVPGPNNGTCWICLAEYNSKETIRCIPECKHCFHSDCIDEWLRMNSTCPVCRNTPTPSPS 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00328 370 ProSiteProfiles Zinc finger RING-type profile. 320 362 IPR001841 -
Aip02g00328 370 Pfam Wall-associated receptor kinase C-terminal 145 219 IPR032872 -
Aip02g00328 370 SUPERFAMILY RING/U-box 319 365 - -
Aip02g00328 370 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 8 368 - -
Aip02g00328 370 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 287 367 IPR013083 -
Aip02g00328 370 Pfam Wall-associated receptor kinase galacturonan-binding 23 90 IPR025287 GO:0030247
Aip02g00328 370 SMART ring_2 320 361 IPR001841 -
Aip02g00328 370 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 368 - -
Aip02g00328 370 Pfam Ring finger domain 319 362 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00328 Aip-Chr2 4434422 4438936 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00328 29 367 C3H Transcription Factor Family AT2G25410 43.516 1.55e-86 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00328 - - adu:107463372 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00328 02 4434422 4438936 Aip02g00328 02 4434422 4438936 ECH