Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00324 ATGACTGAGAAAAAGTTTGTTAGATTTGAGGATTGGAGATCAGATTCAAGTACAAGCATTATTGAAAAGTATGATCTATCCACTGATGGATTCTTCAAAAGAAAAGTTATAAAAAAACCAGGTGCAACTCCTACTAATAATAAAAGTGATGGAAAAGAATCAACCAATAAAAAGTGTTGTACCAAGATCAAGGTTCTTGATCCACAAGGTCCATTGCTTCAAAAATGGAACAAAATCTTTGTGATCATATGTGTTATGGCAATTTCTGTGGACCCTCTATTCCTCTACATTCCTGTGATCAATGAAGAGAAGAAGTGCCTTAGTTTGGATAAAAGATTGGAGATTGTTGCTTGTGCTCTTAGAACATTCTTTGATCTTTTCTACATTATTAGGATCTTGTTTCAGTTTAGAACAGGGTTTATTGCACCTTCTTCACGTGTGTTTGGAAGGGGTGAGTTGATTCATGACACAAAAGCCATTGTCATCAGATACTTGTGCTCAGATTTCATCATTGATATTCTATCAATTATTCCACTTCCTCAGATGTACATCTTAGCTATCCTTCCAATACCATCAAGCACATTTCCATACAAGGTGAAGAACATGTTGAAGTTCACAATTCTAGCTCAGTATGTGCCAAGACTTCTGAGGTTGTATCTTTTATTCAAAGAAGTGACAAGCACTTGTGGTATTCTCACTGAGACAGCATGGGCTGGTGCTGCCTATAATCTTTTTCTATATATGCTTGCAAGTCATGTGGTTGGAGCTTTCTGGTACTTGTTCTCAATAGAAGCAGAGGTTAGGTGTTGGCACAAGGTGGTGAAATTTCATAATTACTCCAGTTATGTATACCTTAGCTGTGGTGGAATGGCCAACAATAATCCACAAGTTCAATTACTTTTGAGCAAGGATAATTATTGCCAGCTTGAGAACCCTGATGACATAAAAGATCAAAATGTTTTCAATTTTGGAATATATACTCAGGCTCTAATGGCTCATATTGTAGGATCAAGTACAGATTTTCCTCAGAAGTTCTTCTTCTGTTTTTGGTGGGGTTTTCGCAACTTAAGTTCTCTTGGACAAAACCTCTTGTGTAGTACTTACATTGGGGAGAATATATTTGCTATCCTCATTGCCATCTTTGGATTGGTTCTGTTCTCATCACTCATTGGAAACATGCAGAAATATCTACAATCTACAACTGTAAGAGTTGAAGAGATGAGGATCAAAAGGAGGGACGCGGAGCGGTGGATGTCGCACCGGATGCTACCGGATTGCATAAGAGAAAGGATCAGAAGGTATTTGCAGTACAAATGGCAACAGAATAGGGGTGTTGAGGAGGAAGCATTGATTAGAAACCTTCCTAAAGATCTCAGAAGAGACATTAGGCGTCATCTTTGCTTGAAATTACTTACAAGAGTGCCAATGTTTGAGAACATGAACAAACAATTGTTGGATGCAATGTGTGACAGACTGAAGCCAGTTCTTTACACAGAGAAGAGCTACATAGTTTGCGAAGGCGATCCGGTCGACGAAATGCTCTTCATTATGCGGGGAAACCTCAGAACCGCCACGACAAATGGCGGCAGAACAGGCTTCTTCAACTCCTCTGAGCTGAGGGCTGGTGACTTCTGTGGAGAAGAGCTTTTGACATGGGCCTTGGATCCAAATTGCACACCAAGTTTACCAATTTCAACAAGAACTGTTGAAACCATATCTGAAGTTGAAGCTTTTGCTCTCATGGCTGATGACTTGAAGTTTGTTGCTTCGCAATTTCGAAGAGTTATAAACAGCAAACAACTCCAGCATACTTTCAGGCAAGCCTTCATAACCATGCATCATTTCAATTCATGTGGAAAAGTATTCTACTCCTTACAATGGAAGACATGGGCAGCATGTTTCATCCAAGCAGCATGGCGAAGATACCGGAAGAAGAAGGCAGAGAGAGTGTTGCGCGAAGCCGAAGAGGTGCAATCTTTTGGAATGGAGGATGGATATAGCAACAACAGCAGCTCATCATCACCAAGCTTTGTTGCCACAGTTTATGCACAAAAGTTTGCAGCCAATGCTCTTAGACCCATAAGAAGTGGCAAACGCACCAACAAAGTTCCGCCTCCGACACAGAGAAAATTTTCACCATATCTGCTTTGGTTTCTGAATAGCAGCAGAAGCATCATCATGGCTGCAAAGGAACAGAAGTTTGAAAGGCTTGAGGATTTGAGATCAGATTCATCTGTGAGTATTGAGAAGAATGATTCAGCTAGTCATGAATTCAACAAAAGATTGGTTACTAAGAGAAAAGTTCTTAATCCACATGAGCCACTACTTCAGAAATGGAACAAAATATTTGTGATCACATGTGTCATGGCAATCTTTGTGGACCCTCTTTTCTTTTACATCTCAGTTATCAATGACAAGGGAAAATGCCTCAAATTGGATGAAACACTGAAGATCACCACATGTGTCCTTCGCACATTCTTTGATCTTTTATATGTTCTTCGTATCATCTTTCAGTTTAGAACTGGGTTTATTGCCCCTTCTTCTCGAGTGTTCGGAAGGGGTGAGTTAATTGATGACAGTATTGCTATAATGAAAAGATACTTAACTTCAAATTTCATCATTGACATTCTATCAATTATTCCACTTCCACAGATGATCATCTTACCTATCATACCAGTTCCAAAACGCACTCTTCCATATCTGGCTCAGAATATGCTGAAGTACACAATAATTGTTCAGTATGTGCCAAGGCTTCTGCGGCTTTATCTACTACTCAAAGAAATAACCAACGCTTTTGGCACACTGACTGAGACGGCATGGGTTGGAGCTGCTTATAATCTTCTTCTCTGTATGCTAGCAAGTCATGTAGTTGGAGCTTTTTGGTATCTGTTTTCGGTGGAATCAGAGGTCCGGTGTTGGCACACAAAGTTGAAGCACACTAAATTCTCTGCTGAGTCCTACCTTAGCTGTGGACAACACTACAAACAAGATGTTTTATCACTTTTGAACAGTTCAAACACTTGCCCTTACATTGATATTGATCCTCAAAACAGCAAAGACCCAACAGTTTTCGATTTCGGGATATTTACACCAGCTCTGAAGTCTCATGTGGTAGAATCAACTACAGGTTTTACTCAGAAGTTCTTCTTCTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTCTTGGGCAAAATCTCCTGGGTAGTACTTACATTTGGGAGAATATCTTTGCTATCTTTATTGCGATCTTTGGATTGGTTCTGTTCTCATCACTAATAGGAAACATGCAGAAATATCTACAATCTACATCCCTAAGAGTCGAAGAGATAAGATTTGATGAGATGAAATTCAAAAGAAGAGACATAGAGCGCTGGATGTCCCACCGCATGCTACCAGACACTTTGAAGGAAAGAATTAGGAGGTATGAACAATACAAGTGGCAACAAAATAGGGGTGTTGAGGAGGAAGGAATAATTGGCAGTCTCCCTAAAGATCTCAGAATGGACATAAAGCGTCATCTCTGCTCGGATTTACTTAGAAGAGTACCAATCCTTGAGATCATGGACAGACATCTACTGGATGCCATGTGTGCCAGATTAAAGCCAGTCCTTTATACAGAGAACAGCAGAATTGTTTGCAAAGGAGATCTGATTGATGAAATGCTCTTTATTATACGCGGACAACTTGCTTGTGCCACAACAAATGTTTTCTTCAAGGCTGGTGACTTCTGTGGAGAAGAGCTTATTACGTGGGCCTTTTATCCGAACTCCTCAAATCAATTACCCATTTCAAGAAGATCAATTGAAACAATAACAGAAGTTGAAGCTTTTGTTCTCATGGCTGATGACTTGAAGTTTGTTTTTTCACAATTTCAAGACCTTAATAAAAACAACGAAAAGATCCGTCACTATTACAGGTTCTTTTCCCCGCAATGGAGGACATGGGCTGCATGTTTCATACAAGCAGCTTGGCGTCAGCATCGAAAAAAAGAAGGCAAAGAGAGCATACATGAAGCACAAGAGCTGCATGCTATTGCAAGCGAGCAATGGTGTAGCTCCTCAGTAAGCTTTGCATCCAAAGTACCTGTATCTAAGTTATCATGCAAAGCATTACAACCCACACGAAGTTGCAAGCGCAAGAGGATGCCATAG 4152 0.401 MTEKKFVRFEDWRSDSSTSIIEKYDLSTDGFFKRKVIKKPGATPTNNKSDGKESTNKKCCTKIKVLDPQGPLLQKWNKIFVIICVMAISVDPLFLYIPVINEEKKCLSLDKRLEIVACALRTFFDLFYIIRILFQFRTGFIAPSSRVFGRGELIHDTKAIVIRYLCSDFIIDILSIIPLPQMYILAILPIPSSTFPYKVKNMLKFTILAQYVPRLLRLYLLFKEVTSTCGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSIEAEVRCWHKVVKFHNYSSYVYLSCGGMANNNPQVQLLLSKDNYCQLENPDDIKDQNVFNFGIYTQALMAHIVGSSTDFPQKFFFCFWWGFRNLSSLGQNLLCSTYIGENIFAILIAIFGLVLFSSLIGNMQKYLQSTTVRVEEMRIKRRDAERWMSHRMLPDCIRERIRRYLQYKWQQNRGVEEEALIRNLPKDLRRDIRRHLCLKLLTRVPMFENMNKQLLDAMCDRLKPVLYTEKSYIVCEGDPVDEMLFIMRGNLRTATTNGGRTGFFNSSELRAGDFCGEELLTWALDPNCTPSLPISTRTVETISEVEAFALMADDLKFVASQFRRVINSKQLQHTFRQAFITMHHFNSCGKVFYSLQWKTWAACFIQAAWRRYRKKKAERVLREAEEVQSFGMEDGYSNNSSSSSPSFVATVYAQKFAANALRPIRSGKRTNKVPPPTQRKFSPYLLWFLNSSRSIIMAAKEQKFERLEDLRSDSSVSIEKNDSASHEFNKRLVTKRKVLNPHEPLLQKWNKIFVITCVMAIFVDPLFFYISVINDKGKCLKLDETLKITTCVLRTFFDLLYVLRIIFQFRTGFIAPSSRVFGRGELIDDSIAIMKRYLTSNFIIDILSIIPLPQMIILPIIPVPKRTLPYLAQNMLKYTIIVQYVPRLLRLYLLLKEITNAFGTLTETAWVGAAYNLLLCMLASHVVGAFWYLFSVESEVRCWHTKLKHTKFSAESYLSCGQHYKQDVLSLLNSSNTCPYIDIDPQNSKDPTVFDFGIFTPALKSHVVESTTGFTQKFFFCFWWGLRNLSSLGQNLLGSTYIWENIFAIFIAIFGLVLFSSLIGNMQKYLQSTSLRVEEIRFDEMKFKRRDIERWMSHRMLPDTLKERIRRYEQYKWQQNRGVEEEGIIGSLPKDLRMDIKRHLCSDLLRRVPILEIMDRHLLDAMCARLKPVLYTENSRIVCKGDLIDEMLFIIRGQLACATTNVFFKAGDFCGEELITWAFYPNSSNQLPISRRSIETITEVEAFVLMADDLKFVFSQFQDLNKNNEKIRHYYRFFSPQWRTWAACFIQAAWRQHRKKEGKESIHEAQELHAIASEQWCSSSVSFASKVPVSKLSCKALQPTRSCKRKRMP 1383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00324 1383 SUPERFAMILY cAMP-binding domain-like 1114 1296 IPR018490 -
Aip02g00324 1383 SUPERFAMILY Voltage-gated potassium channels 771 1101 - -
Aip02g00324 1383 Gene3D Jelly Rolls 1182 1293 IPR014710 -
Aip02g00324 1383 Gene3D Jelly Rolls 474 594 IPR014710 -
Aip02g00324 1383 CDD CAP_ED 476 585 IPR000595 -
Aip02g00324 1383 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 5 705 - -
Aip02g00324 1383 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 724 1382 - -
Aip02g00324 1383 Gene3D - 78 400 - -
Aip02g00324 1383 Gene3D Helix hairpin bin 1112 1175 - -
Aip02g00324 1383 Gene3D Helix hairpin bin 403 467 - -
Aip02g00324 1383 SUPERFAMILY cAMP-binding domain-like 405 592 IPR018490 -
Aip02g00324 1383 Gene3D - 781 1103 - -
Aip02g00324 1383 SMART cnmp_10 476 607 IPR000595 -
Aip02g00324 1383 SMART cnmp_10 1184 1306 IPR000595 -
Aip02g00324 1383 Pfam Ion transport protein 76 404 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aip02g00324 1383 Pfam Ion transport protein 779 1106 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Aip02g00324 1383 CDD CAP_ED 1184 1294 IPR000595 -
Aip02g00324 1383 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 5 705 - -
Aip02g00324 1383 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 724 1382 - -
Aip02g00324 1383 SUPERFAMILY Voltage-gated potassium channels 67 398 - -
Aip02g00324 1383 ProSiteProfiles cAMP/cGMP binding motif profile. 476 550 IPR000595 -
Aip02g00324 1383 ProSiteProfiles cAMP/cGMP binding motif profile. 1184 1259 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00324 Aip-Chr2 4378776 4406909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00324 3 716 Ion Channels AT5G53130 57.724 0.0 815
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00324 K05391 - ahf:112708046 1836.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00324 02 4378776 4406909 Aip02g00324 02 4378776 4406909 ECH