Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00319 ATGCCAACAACTAAGCTCTTCTTCTCCCCACTCCGTCTTCTCCATCTCCCTTCTTCTTCTTCTTCTTCTCTCACAATGAAGCCACCATCTTCATTATTCCTCTCTCGTCCTTCTAGAACTTTCTTCCCTACCTTCCCTTTCAAATTCAAGTACCTCGCCCTCCGAAACGCACCGTTTCGCGCCCTTTCCACTCGCTCCGACTCCACGCGCCGCAAAGAAAGGCCTCGCCTTTCTTCTCCCTCCGCCACCCCAAAGAGCTTAATTGACGACGAGGCTGAGCTCAGTGACTGGGTCGACGAGATTAGAACCGCGCGAGTTGACTCGGACTTTGGCGAGTCAACTCGGAATCGCAGGCAAGTTCGCCGTGACACTAATTCGAACTCGTCGTTCTCGCGGAATTCGGGGTTTTCGCAGCGCAGATTCGGTCGCGAATTGGAGAAGGAAGACAATGGCGGATTCAGGACAAGGAAGAGAAGGGGTGTGGAATTGAACAGAGGAAGTGGAGGGAAGAGTTTGAGCAGAAAACCTAAACCCCAATTGATGAGCGATGATGAAGATGATGAAGTGGTTGTGAGAAAGGGATTCAAGGGTTTTCTGAGTGAGGAAGAGGAAGAAGAAGAAGAAGAAAGTGGTGAGAGTGAGGATGATGAGATTGTGAGAAAGAGTAGAACTGCTTTGTTTGGTGGCACTAAACAACAACAACCAGCACCAGCAGCTCCAAGAGCTTCTTCACCTTCTGGAACTGATTCTTATTTGAGTGACACCAGGTTCGATCAATGTTCAATCTCCCCACTATCATTAAAAGGAGTCAAGGATGCTGGATATGAGAAGATGACTATTGTACAGGCGGCAACTCTTCCTGTAATACTCAAAGGTAAGGATGTCCTTGCCAAGGCTAGAACAGGCACTGGGAAAACAGTTGCCTTTTTGCTTCCATCAATTGAAGTTGTTGCAAATTCACCACCAACTGAACGTGATCATAGGCGGCCACCAATTCATGTGCTTGTCATATGTCCAACTCGAGAGCTTGCAAGTCAAGCGGCTACAGAAGCTGCTAAATTGCTTAAGTATCATCCTACCATTGGTGTTCAGGTTGTAATTGGAGGGACGAGACTTGCCTTAGAACAGAAACGTATGCAAGCAAATCCTTGCCAGGTAAATCCTTCTATTATTGCGGCTGAAGTGTTATTTCTAGACAACCAGGCTCATTCTGATATGGTTATTGTTTTGAAGGTGCGTCAAGTCTGTCATATTGCTTTGAGAAGGGATCATGAGTTTATCAATACGGTTCAAGAGGGAACTGAGGAGACGCACTCACAGGTTCGCCAAGCACATTTAGTTGCCCCATTAGACAAGCATTTCTCTTTACTCTATGCTCTTCTAAAGGAGCACATTGCGGATGATGTTGACTATAAGGTTCTTGTGTTCTGCACAACTGCCATGGTGACAAGACTTGTTGCTGAACTTCTTGGCGAGTTGAACCTGAATGTCAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGAGTCTCTGAAGAATTTCGCAAGTCAAAGGGACTTATCTTGGTTACATCCGATGTGTCTGCACGTGGAGTTGATTATCCAGATGTCACTCTTGTTGTACAGGTTGGTTTACCCACTGACAGAGAACAGTATATACATAGACTTGGTAGAACGGGACGTCGAGGGAAGGAAGGGCAGGGCATATTGCTTTTGGCTCCATGGGAAGAGTTCTTCTTATCTACCGTAAAAGATTTGCCTATTGAGAAAGCTCCCATTCCTTCTGTTGATCCTGACACAAAGAAAAAGGTGGAAAGGGCTCTATGCCATGTTGAGATGAAGAACAAAGAAGCAGCATATCAAGCATGGCTTGGTTACTACAATTCGAACAAGAAGATCGGGCGCGACAAGTATAGGCTCGTAGAGCTTGCAAATGAGTTCAGCAAATGCATGATGCTTGATAACCCTCCTGCTATCCCTAAGCTTGTTCTTGGCAAGATGGGACTTAGAAATATCCCTGGTTTGCGTTCCAAATAG 2043 0.4591 MPTTKLFFSPLRLLHLPSSSSSSLTMKPPSSLFLSRPSRTFFPTFPFKFKYLALRNAPFRALSTRSDSTRRKERPRLSSPSATPKSLIDDEAELSDWVDEIRTARVDSDFGESTRNRRQVRRDTNSNSSFSRNSGFSQRRFGRELEKEDNGGFRTRKRRGVELNRGSGGKSLSRKPKPQLMSDDEDDEVVVRKGFKGFLSEEEEEEEEESGESEDDEIVRKSRTALFGGTKQQQPAPAAPRASSPSGTDSYLSDTRFDQCSISPLSLKGVKDAGYEKMTIVQAATLPVILKGKDVLAKARTGTGKTVAFLLPSIEVVANSPPTERDHRRPPIHVLVICPTRELASQAATEAAKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQVNPSIIAAEVLFLDNQAHSDMVIVLKVRQVCHIALRRDHEFINTVQEGTEETHSQVRQAHLVAPLDKHFSLLYALLKEHIADDVDYKVLVFCTTAMVTRLVAELLGELNLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPTDREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLSTVKDLPIEKAPIPSVDPDTKKKVERALCHVEMKNKEAAYQAWLGYYNSNKKIGRDKYRLVELANEFSKCMMLDNPPAIPKLVLGKMGLRNIPGLRSK 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00319 680 MobiDBLite consensus disorder prediction 64 85 - -
Aip02g00319 680 MobiDBLite consensus disorder prediction 139 164 - -
Aip02g00319 680 CDD SF2_C_DEAD 441 574 - -
Aip02g00319 680 Gene3D - 202 395 IPR027417 -
Aip02g00319 680 MobiDBLite consensus disorder prediction 110 255 - -
Aip02g00319 680 MobiDBLite consensus disorder prediction 226 255 - -
Aip02g00319 680 Gene3D - 435 658 IPR027417 -
Aip02g00319 680 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 460 607 IPR001650 -
Aip02g00319 680 PANTHER RNA HELICASE 44 123 - -
Aip02g00319 680 Pfam DEAD/DEAH box helicase 281 385 IPR011545 GO:0003676|GO:0005524
Aip02g00319 680 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 44 123 - -
Aip02g00319 680 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 412 678 - -
Aip02g00319 680 PANTHER RNA HELICASE 215 386 - -
Aip02g00319 680 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 292 596 IPR027417 -
Aip02g00319 680 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 215 386 - -
Aip02g00319 680 PANTHER RNA HELICASE 412 678 - -
Aip02g00319 680 MobiDBLite consensus disorder prediction 177 200 - -
Aip02g00319 680 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 286 498 IPR014001 -
Aip02g00319 680 SMART helicmild6 484 565 IPR001650 -
Aip02g00319 680 Pfam Helicase conserved C-terminal domain 456 565 IPR001650 -
Aip02g00319 680 MobiDBLite consensus disorder prediction 123 138 - -
Aip02g00319 680 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 255 283 IPR014014 GO:0003724
Aip02g00319 680 SMART ultradead3 274 515 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00319 Aip-Chr2 4238037 4242201 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00319 248 595 Eukaryotic Initiation Factors Gene Family AT3G19760 27.877 1.37e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00319 - - adu:107463398 1156.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00319 02 4238037 4242201 Aip02g00319 02 4238037 4242201 ECH