Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00310 ATGGAACAAGTTAGTATTGTTGGTGAGTTAATGCAAGGAAAGGAGTTAGCAAAGAAGCTCTTTGACCATTTGAATTCACCATCACCATCATTATCATCATCCTCCTCCTCTTCATCATCATCATCACATGAATCTAATGAAGCTTTGATAGAGAAGATACTTTCAACCTATGAGAAAGCACTCACCATGCTCAATAACACCAACTTCATGAAGGATTCTTCTCATTGTTCATCTTCTTCTCTTGCAAATGGCAGCACAAAAAGTGAGGTCTTGGATAAAGAGGATGTTGCAAAGCACAAACAAGTGTCCAAGAAAAGAAAGACTATGTCAATGTGGACAAAGCAAGTGAGGGTGTGTTTGGGAACAGAGCTTGATGGTTCTATGGAAGATGGCCATAGCTGGAGAAAATATGGACAGAAGGACATTCTTGGAGCCAAGTTTCCAAGAGGATATTTCAGATGTACACATAGACATGTACAAGGTTGTTTGGCCACAAAACAAGTTCAAAAATCAGATGAAGATCCAAATGTGTTGGAAATAACCTACAAAGGAAGACACACTTGCATTCAAGTTAGTCATCACTCAAAAAAACCAACAATTTCAAAACCAAACATGGCCTTATTATTAGAAGAACAAACCAAGAATCATCAACCAACACAAAAAGAGATGAAAACAGAACAACCCCATGAAACAATTCTCACATTTGGAACATCACAAGAACTTGAAGTCAAACTTGATGACTTTGACTTTGACTTTGACCCTGACACAAAGGAGAACATTTTCTCTTCACTTTGCTTCACTTCCCCATCAATAGTTTCTGAAAATGATGAAGACAACAACAAAATGTTCTCTTACATTGAAAGCTTTTCTCCTGAATTCATATCACCAACAACAAATTCAGAATCAAACAACATTTTCCACTTTAATGATGGACTAGGCCTATGTGTTCAAACCTCAGATTCTGATTTTAGTGATAATGTTTCAGCACCAACTTCATCAGTCTCTAATTCATCAATAGAAGGCTTGGATTTTCACTCCTTTGATGAAAAGGTGGATTTTGATAATTATTACTCCATAAACTCCTAG 1086 0.3674 MEQVSIVGELMQGKELAKKLFDHLNSPSPSLSSSSSSSSSSSHESNEALIEKILSTYEKALTMLNNTNFMKDSSHCSSSSLANGSTKSEVLDKEDVAKHKQVSKKRKTMSMWTKQVRVCLGTELDGSMEDGHSWRKYGQKDILGAKFPRGYFRCTHRHVQGCLATKQVQKSDEDPNVLEITYKGRHTCIQVSHHSKKPTISKPNMALLLEEQTKNHQPTQKEMKTEQPHETILTFGTSQELEVKLDDFDFDFDPDTKENIFSSLCFTSPSIVSENDEDNNKMFSYIESFSPEFISPTTNSESNNIFHFNDGLGLCVQTSDSDFSDNVSAPTSSVSNSSIEGLDFHSFDEKVDFDNYYSINS 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00310 361 Gene3D WRKY domain 100 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip02g00310 361 PANTHER WRKY TRANSCRIPTION FACTOR 46-RELATED 2 355 - -
Aip02g00310 361 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 2 355 IPR044810 GO:0003700
Aip02g00310 361 SUPERFAMILY WRKY DNA-binding domain 127 188 IPR036576 GO:0003700|GO:0006355|GO:0043565
Aip02g00310 361 SMART WRKY_cls 128 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip02g00310 361 MobiDBLite consensus disorder prediction 25 44 - -
Aip02g00310 361 ProSiteProfiles WRKY domain profile. 128 186 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip02g00310 361 Pfam WRKY DNA -binding domain 129 188 IPR003657 GO:0003700|GO:0006355|GO:0043565
Aip02g00310 361 MobiDBLite consensus disorder prediction 24 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00310 Aip-Chr2 4135821 4139951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00310 38 192 WRKY Transcription Factor Family AT5G24110 47.742 5.55e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Aip02g00310 WRKY 6.9e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00310 - - gmx:100170747 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00310 02 4135821 4139951 Aip07g02868 07 114587019 114588502 ECH
Aip02g00310 02 4135821 4139951 Aip02g00310 02 4135821 4139951 ECH
Aip03g03054 03 93850147 93852014 Aip02g00310 02 4135821 4139951 ECH
Aip06g01221 06 17964307 17965590 Aip02g00310 02 4135821 4139951 PCT