Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00245 ATGATCACTGATGTACCTTCTTCTTCTTCCTCTTCCTCTCCCTCCGTCAAGACCCGTAGATGGATCAACCatagaggaacctttgaagaagctttcagaaaacatgaagagaggttcaaagaagagaaggggaaagtccaaagatggagagatgcattgcaaaaagttgcaagttattccggttgggactccaaagataaTCATGAGGCAGCATTGATTGAAAGAATTGTTGATCACATACAAAAATTACTGATTCCTAAGTTGCCATCATCAGTAGGAAACCTCGTTGGTGTTGAATCAAGGATGAAAAAGTTGAATTCACTCATCGGTATGCAGTTGgatgatgttcgctttataggaaaacgtagtagattgtggtctcaagatgacatcagccgtgtgttgtcacaaaataagGGAACTGAAGCAATTCAAGCAATAGTAGACGATGCTCGAGTTCGACCATTAGCAAGATGGTTCTCTGAAGTAATGCTACCAACATTGTACTACAATAAACCATATGAAGCAAGATGGAGCTCTGAAGCTTTCTCCAAGACCAGCAACATAAGGTTGTTAAAGATACGTAATGTGGGTCGTCTTTCCCATGGCCTTGAGTGCCTTCCTTATGCACTCAGAGTTCTTGACTGGCAAGGATGCCCTCTGAAAACTCTGCCACTTACTGATCAACTGGATGTTGTTGACATCAATTTGTCTTGGAGCAAAATTGAACAACTTTGGCACGGAACAAAGATTTTACATAAGTTGAAGTGCATCAACTTGAGTTTTTCCGGTAATCTAAACCAAACCCCTGACTTTGTGGAGGTTCCGAATCTCGAATCGTTAGTTCTTGAAGGTTGTACAAGCCTAACCGAAATCCACTCATCTGTTATGCACCTCAAGAAACTTGTTCAATTGAACTTAAAAGGCTGCAAAAGGCTCAAAGCTCTTCCAGGTAAAATGGAGATGAGTTCATTAAAGGTTTTAAATCTTTCTGGTTGTTCAAACATGAACACTGTCCCAGACTTTGGGAATTGCATGGGACATCTAGCAGAGCTTCATTTGGATGGAACTGCTGTAACAGAGCTACCTTCATCATTAGGATGTCTGGTTGGACTTGTTCTTTTGCATTTACAGAATTGCATGTATCTTGTTTGCCTTCCGGATACCATTCATAAGTTGAAGTCCCTCAAAGTTCTTAATGTTTCTTATTGCTCGAAACTCCGTAGCTTGCCAGAGTGCCTACAGGAAATGAATAATCTGGAAGAACTTTATGCAAGCAACATTGAAGAACTACCTTTATTTTTATATTATCTAGGAAACATCAAAGCAGTGTCATTTGCTGGTTGCAAAGGGCCAACATCTGAGTTTAATTGCTTTCGAGTTCCATCTGCTGTTTGCGGTCCATCCCTTTTGATAAGGGGATTTGCTTTCCGAGAAAACGATTCGACATGTTTATCACTGGGAATAAAATTCCATCATGGTTTGCACCTCAAAAGTCCTCTTCCTTTGCAGAAATACCATTTCCTCATCCTTCTCCTCCAACTGAATGGCTGGGATATGCTCTGTGTTTCTTGCTGGGGTTCTTCATGCACAAGACCTGAAGGGAGATCTTCATTCGTCGTGCTAGGAGGATACGAGCGAGATGGGGTTGCACTAAGGTGCTTCTACGGCGTATATGCTATTCTATACAAGTCAAGAACAGCAACTAACCCTAATAGAATATTTCTCGGGTGTCCATTCTTCAAGGTTAAAGAACGTTACTGCCGATTCTTTGTCTGGCTTGATGAATACCTGAAAAAAATCAGAGCCATAGAGTGTGAAGCATTTAGTGCTGTGGATGATGCTGAGGGAATAGAAGTTGAAGAACAACTGTTTCGAAGGCAAGAGGTAGAGAAAAAACTAGAGGATTTGGAGAGGAAGCTATTATCTATGGAAAAGGAAAAATTCATGAATTTGTGGCATATTAATATGATTAGTGTAGTTGTTGTTATTCTTGCTGTATATTTCTTAAAGGCCTGA 2019 0.3645 MITDVPSSSSSSSPSVKTRRWINHRGTFEEAFRKHEERFKEEKGKVQRWRDALQKVASYSGWDSKDNHEAALIERIVDHIQKLLIPKLPSSVGNLVGVESRMKKLNSLIGMQLDDVRFIGKRSRLWSQDDISRVLSQNKGTEAIQAIVDDARVRPLARWFSEVMLPTLYYNKPYEARWSSEAFSKTSNIRLLKIRNVGRLSHGLECLPYALRVLDWQGCPLKTLPLTDQLDVVDINLSWSKIEQLWHGTKILHKLKCINLSFSGNLNQTPDFVEVPNLESLVLEGCTSLTEIHSSVMHLKKLVQLNLKGCKRLKALPGKMEMSSLKVLNLSGCSNMNTVPDFGNCMGHLAELHLDGTAVTELPSSLGCLVGLVLLHLQNCMYLVCLPDTIHKLKSLKVLNVSYCSKLRSLPECLQEMNNLEELYASNIEELPLFLYYLGNIKAVSFAGCKGPTSEFNCFRVPSAVCGPSLLIRGFAFRENDSTCLSLGIKFHHGLHLKSPLPLQKYHFLILLLQLNGWDMLCVSCWGSSCTRPEGRSSFVVLGGYERDGVALRCFYGVYAILYKSRTATNPNRIFLGCPFFKVKERYCRFFVWLDEYLKKIRAIECEAFSAVDDAEGIEVEEQLFRRQEVEKKLEDLERKLLSMEKEKFMNLWHINMISVVVVILAVYFLKA 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00245 672 Pfam TIR domain 24 83 IPR000157 GO:0007165
Aip02g00245 672 Gene3D Ribonuclease Inhibitor 320 457 IPR032675 -
Aip02g00245 672 PANTHER TMV RESISTANCE PROTEIN N-LIKE 120 369 - -
Aip02g00245 672 PANTHER TMV RESISTANCE PROTEIN N-LIKE 24 120 - -
Aip02g00245 672 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 120 369 IPR044974 GO:0006952
Aip02g00245 672 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 362 442 IPR044974 GO:0006952
Aip02g00245 672 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 120 IPR044974 GO:0006952
Aip02g00245 672 Gene3D - 13 88 IPR035897 -
Aip02g00245 672 PANTHER TMV RESISTANCE PROTEIN N-LIKE 362 442 - -
Aip02g00245 672 Gene3D Ribonuclease Inhibitor 168 319 IPR032675 -
Aip02g00245 672 SUPERFAMILY L domain-like 169 505 - -
Aip02g00245 672 Coils Coil 620 647 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00245 Aip-Chr2 3286735 3292295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00245 120 446 WRKY Transcription Factor Family AT4G12020 36.812 1.09e-45 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00245 - - ahf:112733264 605.905