Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00179 ATGGTGGACGAAGAAGGTGAATTCGCCGGCACAATTTGCTCCATTTGCTACGAAGATCTCAAACCAGTTTCCGAAGATCTTCAATCTATCTCCGTTTGCGGCCACGTCTTCCACGAGCTTTGCTTGCAGCAATGGTTCGAGTACTGTTCGAAAGCGAAGAAGCACACTTGCCCCGTTTGCAAGCAGAGTTGCAGGGTCGGCGATGCTTGCAGGCTTTACTTCCAATCGGTGGGCGATGTGGTCGAATCTGTTATGCATAGGAAACCATTTGATTCCGAAGAAGATTCCGGAGTTTTGAGAAAGGAAGTGAACAGGTTGGAGGTCAGGCTTTCGGGGCTTAGTTCAGAGTTGGAGAAGAAGGTGAAGGAAATTGAGCAGCTCACGAAGGAGCTTGGTGCTTGCAAGGAGAAAGCAAAGATTGAAATAGCATTAAAAAATGAGGCCTTGAGTCAAAAAGCATCCATGCAAACTGAGCTTCGTATGAAGTCAGAGGAGCTTGAGAAGTCAACTTTTGAGTGCTATTCATTACAAAAAAGAAATATCACTTTGGCTAAGGAAATTGCAGCATTTAAATTAGTCTCTGATATTGACCTTAATGAAGAGGAAGTTTTGAAGTATGCAACTTTGGGTAACGGGTTTAATGATAAAGATACGATAGACACATTGAGCAGATCTATGGTTCGGCGTAACAGGGATTACAAAGATCTAATAGCTAAACGCAATGAATTAGTGGCCAAGTGCAATCATCTAGAAAAGGGTGAGGCTCGGTACATTAAAAAGCTTGAGAAGGCTAAGGAGAAGATTCTTAAATTGAAGGCTAGGGTACAAGAACTAGAGACAGCTGCAGAAGTAAGAGAGAACCATTATCTGAAGTCTTTGAAAGCTTCAAAGATGAATAAGTGTTCAAATAATCTTGAAAACAACCTCAGTTCTAAGAATGATGTACCCACGACCAGCAATACTCCATTAAATGAACAAACGAAACAAACTTCACCCAAATCTGAAATGGACTTGAGTGTGAGCAACAGTAAATCTCTACAATTTTCAAGGATAGTCAACTGCATTGCTACCGAAAGTAAAGCTGTAAATGTTAGTAATGAAAATAAATCTACCCCTGCTCTTCAAAAAGAGAGGGATTTTATATCTCTTGATGCTGATGCTTCAGAATTTACTGAACCTTTGTCTGGAGGGTCAAGACGTGACTGCAATGATCGATACAGTGGTGCTGCTCTTAGCAAGCCTACTGTAGCCAAGTCAGATGCAGCATCCGAAAGGAAGAAAGAAACAACAGCTCAAGGAACATGTAACTTGGCTGATTCTTCAAGAATTGACATTGATGTTGAAATGGCGAAAAATGATGTCATTGATTTGGATGATGATATAACATTACTTGATAAACAAGTTCAACCCAAGGTTAATATTATAAAGGAGTCACCACCAATAATTGCAAATCCAGGGGACATTTGTTTTTCTGGCGGATTGCTTGGTCCTGATGGATCACATAGGTACTTGGGTAAATGGTGCAAGCGTAGAAAAAATGGCGAATCGCATTCAGTAAATGGAGGATTGATAGCTGTTGGGGCTGATGGTAGAGGTGGCAGAGTTAAAGTTCTAAGGACAGCAGGCCAAACCTTCATGGATGACAAGGAAAATGACAAGGAATCAAAAAGGTTAAAGGTTGGACCTAAAACAAGTAGTTTGCGACCCCAGGGATGTCTGCAGATAGATCACTTCTTTGGCAGGGTTAATCACTAA 1755 0.4125 MVDEEGEFAGTICSICYEDLKPVSEDLQSISVCGHVFHELCLQQWFEYCSKAKKHTCPVCKQSCRVGDACRLYFQSVGDVVESVMHRKPFDSEEDSGVLRKEVNRLEVRLSGLSSELEKKVKEIEQLTKELGACKEKAKIEIALKNEALSQKASMQTELRMKSEELEKSTFECYSLQKRNITLAKEIAAFKLVSDIDLNEEEVLKYATLGNGFNDKDTIDTLSRSMVRRNRDYKDLIAKRNELVAKCNHLEKGEARYIKKLEKAKEKILKLKARVQELETAAEVRENHYLKSLKASKMNKCSNNLENNLSSKNDVPTTSNTPLNEQTKQTSPKSEMDLSVSNSKSLQFSRIVNCIATESKAVNVSNENKSTPALQKERDFISLDADASEFTEPLSGGSRRDCNDRYSGAALSKPTVAKSDAASERKKETTAQGTCNLADSSRIDIDVEMAKNDVIDLDDDITLLDKQVQPKVNIIKESPPIIANPGDICFSGGLLGPDGSHRYLGKWCKRRKNGESHSVNGGLIAVGADGRGGRVKVLRTAGQTFMDDKENDKESKRLKVGPKTSSLRPQGCLQIDHFFGRVNH 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00179 584 Pfam Ring finger domain 12 61 IPR001841 -
Aip02g00179 584 SUPERFAMILY RING/U-box 10 65 - -
Aip02g00179 584 SMART ring_2 13 60 IPR001841 -
Aip02g00179 584 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 582 - -
Aip02g00179 584 MobiDBLite consensus disorder prediction 390 433 - -
Aip02g00179 584 ProSiteProfiles Zinc finger RING-type profile. 13 61 IPR001841 -
Aip02g00179 584 Coils Coil 103 137 - -
Aip02g00179 584 MobiDBLite consensus disorder prediction 302 340 - -
Aip02g00179 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 64 IPR013083 -
Aip02g00179 584 CDD RING-H2 13 61 - -
Aip02g00179 584 Coils Coil 254 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00179 Aip-Chr2 2720133 2723890 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00179 491 584 C3H Transcription Factor Family AT4G01270 40.594 3.53e-16 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00179 K11985 - gmx:100812811 664.84