Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00118 ATGAACCAGCTTCCCCAACCCGAGCGCCACCGCAGTGACAAATACTCTCCCACTGCTCTTGCCGTCACCGCCGTCGCCACCAACCTCACCAGCAAGCGGATCCTTCAAAAGGACGGCCCCACCCCCGTCGGACCCATAAGGTACCGGGGTGTGAGGCGGAGGCCATGGGGACGTTATGCCGCTGAGATAAGGGACCCTCAAACTAAGGAGCGGCGTTGGCTGGGGACATATGACACTGCGGAGGAAGCCGCCCAAGCCTACGACTCCGCCGCCAGAGTCTTGCGTGGCCCCACTGCGAGAACCAACTTTGTGTATTATATTTCCCCTCCTCAACCTTCTTTAATCTTCGTCACCAACAAAAACAACAATAAAAACATCCTTAACCGCAGTAGCCACTTATTGGGAAGTCAGTTCAGCTTCCCCATCCATCCTAACCAACTCTTCAACAGCCGTAACCGCCACTTGGGTGGTTCTTGGCCTGACCCCTTCTCCTCTTACTCCGCCCCTTCTTCCTTTTCTACCTTCCAGCAACAGCGAAACCAACAGCTTAACTCCACAAACATGCTCCTCCCTCGTGACTTCGTTGCCCCTTCTGTTTCATCTTTCTTTGGCCAGCATTTATCCTACCCCAAGGGCAGTTTGGTCAACTCATCACATGGTGGGCATGCTAATCCTTCTCCTTCATCTTCAGTTAGTCACCATTTATCCTACCCCAAGCGAAGTATCAACTCACTTTCATCTTCATTTACCCACCGTTTATCCTACCCCAGTGGCGGTATCAACTCATCACATGGTGGCAATGCTAATCCTTCTCTTCCATCTTCCCTTAGCCAGCCTTTATCATACCCCAAGGGCAATTTAGTCAACTCATCACATGGTGGTAATGCCAAGCCTTCTGTTTCATCTTCCGTTAGCCACCATTTATCATACCCCAAGGGCAGTTTAGTCAACTCATCACATGGTGGCAATGCTAATAACCCTTCTCTTCCATCTTCCTTATCGTACTCCAAGGGCAGTTTAGTCAACTCATCACATGGTGGTAATGCTAATAACCACTCTGTTTCATCTTCCTTTAGCCACCATTTATCCTACCCCAAGGGCAGTTTAGTCAACTCATCACATGGTAGCAATGCTCCTAACTACACCGCACCCTTTTCTTCCTCTTGCCTGACAAACACAAACAGTCTCGGTTGTGGCAGTGATAATAATCATAAAGCTGATGGCAGTGAATACTCGCAAGAGTTCTTTCATCACTCAGACTCATCATCGGGGTTGTTGGAAGACATAGTTAGCACTTTCTTGAAAAGTCCAAAGCCCACTAAAAGTGAGTGTCTGTTGTTAGGTGCTCCTACTTCTCCATCACAAGATTCTTCCCACCTTAAGGCTGAGTCATTTCCTCCTCTTTCCGCTGTTTCCACAGGCCAGATGACGAAGAAAGACGAGGATTTTAATGTTCCTTTGTATCAAGATGGTTTCCACATGCCGCAACCTGGTGTTTTTAATTTCAATGGCTCTAGCAATACGGCAGTTCCCTCTGGCATGCCTCTTACTCAGGAGAAGAAGAGAAAGAAGAAGAAGAAGGACACCAACACCAAGAAGAAGGAGGAGACCAACAACAACAACAACAACAACAATAATAATAATAATAATAATAATAATAATAATAATAGTAATGATCATGGCCTATCATGGAAGACATTTTTGATCATTACTCGGACTTTCTTAATGACTTTCTTAATTAGATTAGGTTACGTACTTTTATAA 1764 0.4643 MNQLPQPERHRSDKYSPTALAVTAVATNLTSKRILQKDGPTPVGPIRYRGVRRRPWGRYAAEIRDPQTKERRWLGTYDTAEEAAQAYDSAARVLRGPTARTNFVYYISPPQPSLIFVTNKNNNKNILNRSSHLLGSQFSFPIHPNQLFNSRNRHLGGSWPDPFSSYSAPSSFSTFQQQRNQQLNSTNMLLPRDFVAPSVSSFFGQHLSYPKGSLVNSSHGGHANPSPSSSVSHHLSYPKRSINSLSSSFTHRLSYPSGGINSSHGGNANPSLPSSLSQPLSYPKGNLVNSSHGGNAKPSVSSSVSHHLSYPKGSLVNSSHGGNANNPSLPSSLSYSKGSLVNSSHGGNANNHSVSSSFSHHLSYPKGSLVNSSHGSNAPNYTAPFSSSCLTNTNSLGCGSDNNHKADGSEYSQEFFHHSDSSSGLLEDIVSTFLKSPKPTKSECLLLGAPTSPSQDSSHLKAESFPPLSAVSTGQMTKKDEDFNVPLYQDGFHMPQPGVFNFNGSSNTAVPSGMPLTQEKKRKKKKKDTNTKKKEETNNNNNNNNNNNNNNNNNNNSNDHGLSWKTFLIITRTFLMTFLIRLGYVLL 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00118 587 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Aip02g00118 587 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Aip02g00118 587 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
Aip02g00118 587 SUPERFAMILY DNA-binding domain 47 105 IPR016177 GO:0003677
Aip02g00118 587 MobiDBLite consensus disorder prediction 499 514 - -
Aip02g00118 587 MobiDBLite consensus disorder prediction 258 360 - -
Aip02g00118 587 MobiDBLite consensus disorder prediction 498 557 - -
Aip02g00118 587 MobiDBLite consensus disorder prediction 214 237 - -
Aip02g00118 587 Coils Coil 534 554 - -
Aip02g00118 587 MobiDBLite consensus disorder prediction 536 557 - -
Aip02g00118 587 Gene3D AP2/ERF domain 46 105 IPR036955 GO:0003700|GO:0006355
Aip02g00118 587 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 252 - -
Aip02g00118 587 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 18 252 - -
Aip02g00118 587 Pfam AP2 domain 47 96 IPR001471 GO:0003700|GO:0006355
Aip02g00118 587 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Aip02g00118 587 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00118 Aip-Chr2 2159298 2161061 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00118 46 114 AP2-EREBP Transcription Factor Family AT1G24590 79.710 1.05e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip02g00118 AP2 1.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00118 - - aip:110267408 1010.36