Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00117 ATGGACGAAGCACTGAGGCGCCTCAACGGCATGCCACCCCTTTCCGAACCACCTCCCAACAACCCCAGAACCAAGCAGACCTTGCGAGACACCAGCACTGCCCCCACTGCCGGACCCATGAGGTACCGCGGCGTCAGGCGGAGGCCATGGGGCCGTTATGCCGCCGAGATAAGGGACCCTCAGTCCAAGGAGCGCCGTTGGCTGGGGACCTTCGACACTGCGGAGGAAGCCGCCTGCGCCTACGACTGCGCTGCCAGAGCCATGCGTGGCCATAAGGCAACCACCAACTTCGCGTACCATACTTTACCTTCTTACCCTTCTTCTATCACCATCACCAACAACCATAACAATCTCCTCAACTGCCATAACCACCTCTTCACTCATAACCAGTTCAGCTTCCCTTATCATCATAACCAACTCTTCAACGGCCATAACCGCCACTTCGGAGTTTGGTCTGAACCTTTCTCTGCTTCAACCTTCCAGGAACAGCGAAACCTTGACTCCATCAACATGCTTCTCCACCGAGACTTGATAGCCTCTTCTTCCTCCGACAATTTATCCTACAACATGGGCAGTTTTGTCAATTCACATCCTGGCAATGTTCCTAATAACTACTCCGCACCTTGTTCTGACACAAGCAATCTCGGTTGTGGCGGTGGAAGCAAGATCGATAATACAAACAATAATGAAGCTGATGGTGGCGGCGAAGGTTCAGGGTCATCAGGGTTGTTGGAAGAAATAGTTAAGGGTTTCTTGAAGAAAAAGCCAAAGCTCAACAAATGTGAGAGATTGTTAGGTACCAGGACCACTGCTTCAGACGGTTCTTGCCACTCATCATTTTCTCCTCCTCCTCCGGTTGTCTTCGGCGAGTCAAAGATAGACGAGGGTTTCGGCGTTCATTTGGATCAACAGGGTTTCCAATACATGCAGCAGCTTGGTGGTGGTTTCGATAATGGTTTTAGCAATATGGTTATGCTGCCTAACATCCCTCTTCAAGAGAATAACAACCAAATCATGACGACCATGATGATGAATAATGATAATAATCAGCAGAACTAG 1059 0.5005 MDEALRRLNGMPPLSEPPPNNPRTKQTLRDTSTAPTAGPMRYRGVRRRPWGRYAAEIRDPQSKERRWLGTFDTAEEAACAYDCAARAMRGHKATTNFAYHTLPSYPSSITITNNHNNLLNCHNHLFTHNQFSFPYHHNQLFNGHNRHFGVWSEPFSASTFQEQRNLDSINMLLHRDLIASSSSDNLSYNMGSFVNSHPGNVPNNYSAPCSDTSNLGCGGGSKIDNTNNNEADGGGEGSGSSGLLEEIVKGFLKKKPKLNKCERLLGTRTTASDGSCHSSFSPPPPVVFGESKIDEGFGVHLDQQGFQYMQQLGGGFDNGFSNMVMLPNIPLQENNNQIMTTMMMNNDNNQQN 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00117 352 SMART rav1_2 41 104 IPR001471 GO:0003700|GO:0006355
Aip02g00117 352 Pfam AP2 domain 41 91 IPR001471 GO:0003700|GO:0006355
Aip02g00117 352 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Aip02g00117 352 PRINTS Ethylene responsive element binding protein signature 42 53 IPR001471 GO:0003700|GO:0006355
Aip02g00117 352 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Aip02g00117 352 SUPERFAMILY DNA-binding domain 41 99 IPR016177 GO:0003677
Aip02g00117 352 ProSiteProfiles AP2/ERF domain profile. 41 98 IPR001471 GO:0003700|GO:0006355
Aip02g00117 352 CDD AP2 41 100 IPR001471 GO:0003700|GO:0006355
Aip02g00117 352 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE 24 229 - -
Aip02g00117 352 MobiDBLite consensus disorder prediction 1 45 - -
Aip02g00117 352 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 24 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00117 Aip-Chr2 2116898 2117956 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00117 40 254 AP2-EREBP Transcription Factor Family AT1G24590 42.411 9.86e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip02g00117 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00117 - - aip:107641556 468.388