LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip02g00116	ATGCGCCTCCACGCCATGGACCAGCTTCCCCAACCCGAGCGCCACCGCAGCGACAAATGCACTTCCACTGCTCTTGCCGCCACCGCCACCGCCACCGCCACCGCCACCAGACTCACCAGCAAGCGGATCCTTCAAAAGGACGGCCCAACCCCCGCCAGAACCATGAGGTACCGGGGTGTGAGGCGGAGGCCATGGGGACGTTATGCCGCTGAGATAAGGGACCCTCAAACTAAGGAGCGGCGTTGGTTGGGGACATATGACACGGCGGAGGAAGCCGCCCGCGCCTACGACACCGCCGCCAGAGTCTTGCGTGGCCCCAATGCGAGAACCAATTTTTTGTACTATACTTTCCCTCCTCAACCTTTTTCCATCTCCGTCACCAACAAAAATAACCATAAAGACATCCTTAACCGCAGTAGCCACCTCTTGGGAAGCCAGTTCAGCTTCCCCATCCATCCTAACCAACTCTTCAACTGCCGTAACCGCCACTTGGGTGGTTTTTGGCCTGACCCCTTCTCCTTCTACTCCGCCCCTTCTTCATTTTCTACCTTCCAGCAACAGCGAAACCAGCAGCTTAACTCCACAAACATGCTCCTCCCCGGTGACTTCATAGCCCCTTCTGTTTCATCTTCCTTTAGCCAGCATTTATCCAACCCCAAGGGCAGTTTGGTCAACTCATCACATGGTGTCCATGTTAACCCTTCTCCTTCATCTTCATTTAGTCACCATTCATCCTACCCCAGAGGCAGTATCAACTCATCACATGGTGGCAATGCTAATCCTTCTCTTTCATCTTCCCTTAGACAGCCTTTATCATACCCCAAGGGCAATTTAGTCAACTCATCACATGGTGGCAGTGCTAACCCTTCTGTTTCATCTTCCTTTAGCCACCATTTATCATACCCCAAGGGCAGTTTAGTCAACTCATCACATGGTGGCAATGCTAATAACCCTTCTCTTTCATCTTCCTTATCCTACCCCAAGGGCAATTTAGTCAACTCATCACATGGTAGCAATGCTCCTAACTACACCGCACGCTTTTCTTCCTCTTGCCTGACAAACACAAACAGTCTCGGTTGTGGCAGTGATAATAATCATAAAGCTGATGGCAGTGAATACTCGCAAGAGCTCTTTCATCACTCAGACTCATCATCCGGGTTGTTGGAAGACATGGTTAGCGGTTTCTTGAAAAGTCCAAAGCCCACTAAAAGTGAGTGTCTGTTGTTAGGTGCTCCTGCTTCTCCATCACAAGATTCTTCCCACCTTAAGGCTGAGTCATTTCCTCCTCTTTCCGCTGTTTCCACAGGCCAGATGACGAAGAAAGACGACGATTTTAATGTTCCTTTGTATCAAGATGGTTTCCACATGCAGCAACTTGGTGTTTTTAATTTCAATGGCTCTAGCAATACGGCGGTTCCCTCTGGCATGCTTCTTAATCAGGAGAAAAAGATAAAGAAGAAGAAGAACAACAACAGCAACAAGAAAAACATCAACAACAACAACAATAATAATAACACTCAGACTCATCATCCGGGTGCTCCTACTTCTCCATCACAAGATTCTTCCCACCTTAAGGCTGAGTCATTTCCTCCTCTTTCCGCTGTTTCCACAGGCCAGATGACGAAGAAAGACGAGGATTTTAATGTTCCTTTGTATCAAGATGGTTTCCACATGCCGCAACCTGGTGTTTTTAATTTCAATGGCTCTAGCAATACGGCGGTTCCCTCTGGCATGCTTCTTAATCAGGAGAAGAAGATAAAGAAGAAGAAGAAGGACAACAACAACAACAACAACAACAACAACAACAATAATAATAATAATAATAATAATAATAATAATAATCTTGAAGAGTGGCCTATCATGGAAGACATTTTTTATCAGTACCCGGACTTTCTTAATTAG	1902	0.4695	MRLHAMDQLPQPERHRSDKCTSTALAATATATATATRLTSKRILQKDGPTPARTMRYRGVRRRPWGRYAAEIRDPQTKERRWLGTYDTAEEAARAYDTAARVLRGPNARTNFLYYTFPPQPFSISVTNKNNHKDILNRSSHLLGSQFSFPIHPNQLFNCRNRHLGGFWPDPFSFYSAPSSFSTFQQQRNQQLNSTNMLLPGDFIAPSVSSSFSQHLSNPKGSLVNSSHGVHVNPSPSSSFSHHSSYPRGSINSSHGGNANPSLSSSLRQPLSYPKGNLVNSSHGGSANPSVSSSFSHHLSYPKGSLVNSSHGGNANNPSLSSSLSYPKGNLVNSSHGSNAPNYTARFSSSCLTNTNSLGCGSDNNHKADGSEYSQELFHHSDSSSGLLEDMVSGFLKSPKPTKSECLLLGAPASPSQDSSHLKAESFPPLSAVSTGQMTKKDDDFNVPLYQDGFHMQQLGVFNFNGSSNTAVPSGMLLNQEKKIKKKKNNNSNKKNINNNNNNNNTQTHHPGAPTSPSQDSSHLKAESFPPLSAVSTGQMTKKDEDFNVPLYQDGFHMPQPGVFNFNGSSNTAVPSGMLLNQEKKIKKKKKDNNNNNNNNNNNNNNNNNNNNNNLEEWPIMEDIFYQYPDFLN	633

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aip02g00116	633	MobiDBLite	consensus disorder prediction	1	20	-	-
	Aip02g00116	633	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	12	286	-	-
	Aip02g00116	633	MobiDBLite	consensus disorder prediction	587	615	-	-
	Aip02g00116	633	PRINTS	Ethylene responsive element binding protein signature	79	95	IPR001471	GO:0003700\|GO:0006355
	Aip02g00116	633	PRINTS	Ethylene responsive element binding protein signature	57	68	IPR001471	GO:0003700\|GO:0006355
	Aip02g00116	633	MobiDBLite	consensus disorder prediction	493	526	-	-
	Aip02g00116	633	Gene3D	AP2/ERF domain	55	114	IPR036955	GO:0003700\|GO:0006355
	Aip02g00116	633	SMART	rav1_2	56	119	IPR001471	GO:0003700\|GO:0006355
	Aip02g00116	633	MobiDBLite	consensus disorder prediction	595	615	-	-
	Aip02g00116	633	Pfam	AP2 domain	56	105	IPR001471	GO:0003700\|GO:0006355
	Aip02g00116	633	MobiDBLite	consensus disorder prediction	215	295	-	-
	Aip02g00116	633	SUPERFAMILY	DNA-binding domain	56	113	IPR016177	GO:0003677
	Aip02g00116	633	ProSiteProfiles	AP2/ERF domain profile.	56	113	IPR001471	GO:0003700\|GO:0006355
	Aip02g00116	633	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE	12	286	-	-
	Aip02g00116	633	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ESR2-LIKE	288	481	-	-
	Aip02g00116	633	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	288	481	-	-
	Aip02g00116	633	Coils	Coil	579	599	-	-
	Aip02g00116	633	MobiDBLite	consensus disorder prediction	486	526	-	-
	Aip02g00116	633	CDD	AP2	56	112	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip02g00116	Aip-Chr2	2081523	2083495	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aip02g00116	54	150	AP2-EREBP Transcription Factor Family	AT1G24590	57.547	4.71e-30	119

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2 or ERF-ERF	Aip02g00116		AP2	1.6e-12	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip02g00116	-		-	adu:107472834	791.571