Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00085 ATGCAGTCAGGTGGCGGTGGCCGGAACCCTGGGGTTGGCCGGACGGGCTCCACGGCGACGTCGTCAGCTGCGGCGTCGCCGTCGTCTTCGTCTTCGGCATCCCAATTGGGGCTTGATCAGCATCATCTTCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGATAAGTTCTAGTAGACAGTCATTTCAACAACAGTTACTTAGAAAACCTGAAGGGAATGAAGCTTTCTTAGCATATCAAGCTGGGCTCCAGGGTGCCTTTGGGAATAACAATTTCTCATCTCCTGGTGCCATGCAATTGCCCCAGCAGTCTCGAAAGTTCATGGAATTAGCTCAACATGGTGCCAGCCAAGATGGCCAGTTCAGGGCTCAAGGTGTTGAGCAGCAAATGATGAATCCTATGCATCAAGCATACCTTCAATATGCACTTGCACAACAAAAATCTGCGATGGGAATTCAGTCGCAGCAGCAAGCTAAAATGGGAATGTTAAACCCATCTCTGAAGGATCAGGAAATGCGCGTGGCAAATCTGAAAATGCAGGAAATGATGGCTATGCAGGCTATGCATCAAGCTCAAGGATCATCATCTAGGAATTCTTCCGAACATGTGTCACGTGGGGAAAAACAGATCGAGCCAGGACCGCAGACAGCTCCTGATCAGAAGACTGAAGGAAAGCCTTTATCCCAAGGACCAGCTATTGGACATGTAATGCCTGGCAATGTGGTGAGACCAATGCATGTGCCAGAATCTCAGCAGGGAATTCAAAATTTTATGGCAATGTCTGCGCAATACCAGGCTATGCAGGCATGGGCACGCGAACGCAACATAGATTTGTCGCATCCTGCAAATGCTAACATAATGTCGCAGCTCATTCCAATGATGCAGGCAAGGATGGCCTCCCAACAAAAGGTCAACGAGAGCAACGTTGGTGTTCAGTCAACACCTGTTCCTGTTTCAAGGCAGCAGGTCACTTCTCCAGCTGTTGGAAGTGAGGGTTCTGCACATGCTAATTCGTCAAGTGAAGCATCTGGGCAGTCAGGTTCTTCAAAAGCCAGGCAGTCAGTTCCACCCGGCCATTTTGGCTCCACAACAAATTCTGGCATAGGCAGTGGCTCCAGTGACATGGTGATGCAGCAACTTGGTGCTCAAGGAAGAGAGTCTCCAGCTTCTTTGAGGCAACCAGTCTCAGTGGGAAATGGAATGCCCTCTGTGCATCCTCATCAGTCTTCTGCCAACAGGAACTCAGGTGCAGAACATCCCATGGGTGCAAAAACTTCATCATCTGGTTCAGAACCCCCGCAAATGCAAAACTTAAGGCAGTTAAACCAATCCTCATCTCAGGCCGGAGTTCCAACAAATGAAGGTGGCTCGGGAAGTCATGCTAAATCTCAAACGGCACCACCAGCTCAGATGCCTCAGCATCGGACAGGAAGCGTGTTTACCAAGCAGCAGCTTCATGTTCTTAAAGCCCAAATACTTGCATTTAGGCGGCTGAAGAAAGGGGAAGGTACTCTGCCTCAAGAACTTCTACGTGCTATTGCTCCGCCGCCTCTTGAGATGCAGGTGCAACATTCAAATCATCCCACAGGAGGACAAAATCAAGACAAACCTTCTGGCAGTATCGCGGCAGAACAACCAAGGCACACTGAACCCAATGCAAAGGATTCACAATCTATCCCAGCTATTAATGGACAGAGTTCTTTAAAGCAGGAACCCTTTCCCAGAGAAGAGAAATCCGTTGTACCACCGGTTCCTGTGCAAGCTGTTATGCCACCTGCACCAAAGGAATCTGCTCCAACATTATCTGCTGGAAAGGAAGAGCAGAAATCAGTTGCATGCCCTGATAAGTCAGACCAGGACAGGGACAGTGATCGTGGAAAGAACAGAACTCCTCCTAGGAATGATTTAGTGCTAGATAGGGGAAAGGCGGTTGCACCGCAGGCTTCTGTATCCGACTCAACCCAAATTAAGAAATCGGCACAAACAAGCACTGTTTCCCAGCCAAAGGATGCGGCATCTACTAGAAAATATTGCGGACCCCTATTTGATTTTCCTTCATTCACTAGGAAACATGACTCTTTTGGGTCATCGATGATGGTAAACAATAATAATAATCTGTCACTGGCATATGATGTCAAAGATCTTCTTTTAGAGGAAGGCATGGAAGTACTTAACAAGAAACGTACAGAAAATTTAAAGAAGATTGAAGGGTTGTTGGCAGTGAACTTAGAGAGGAAAAGGATTAGGCCAGATCTTGTGTTAAGGCTACAGATTGAAGAAAAAAAGCTTCGCCTTGTAGACCTTCAGGCACGTTTAAGGGACGAGATTGATCAACAGCAACAAGAGATAATGGCAATGCCGGATAGGCCATATCGTAAGTTTGTAAGGCTGTGTGAGCGTCAGCGTATGGAACTTGCTAGACAAGTGCAGGCATCTCAGAGAGCTTTGAGGGAGAAGCAGCTTAAATCTATATTTCAATGGCGTAAGAAGCTTCTTGAGACACATTGGGCTATTCGTGATGCCCGTACTGCCCGCAACAGGGGTGTGGGTAAATATCACGAGAGGATGATGAGGGAATTTTCAAAACGTAAAGATGATGACAGAAACAAAAGGATGGAAGCTTTAAAGAACAATGATGTTGACCGATATAGAGAGATGTTACTGGAGCAACAGACTAGCATGCCAGGCGATGCTGCAGAAAGATATGCTGTTCTCTCAACTTTCTTAAGTCAGACAGAAGAGTATCTGCATAAATTAGGAAGTAAGATAACTGCTGCCAAAAATCAACAGGAAGTGGAGGAGGCAGCAAAATCTGCTGCTGCTGCTGCACGATTGCAGGGTCTTTCTGAGGAAGAAGTAAGAGCTGCTGCAGCTTGTGCAGGGGAGGAAGTAATGATTAGAAATCGTTTTCTGGAGATGAATGCTCCTAGGGACAGTTCATCTGTCAACAAGTATTACAACCTTGCTCATGCTGTGAGTGAAACTGTGATTAGGCAACCATCAATGTTACGTGCTGGAACATTGAGAGACTATCAACTTGTTGGTTTACAATGGATGCTTTCTTTGTACAATAACAAGTTGAATGGAATTTTGGCGGATGAGATGGGTCTTGGAAAAACTGTGCAGGTTATGGCATTGATTGCATACTTGATGGAATTTAAAGGAAACTATGGCCCGCATCTTATAATAGTACCGAATGCTGTTTTAGTTAACTGGAAGAGCGAGTTTTATAATTGGCTACCATCTGTGTCGTGCATTTTTTATGTTGGAAGCAAGGATCAACGGTCAAAATTATTTTCACAAGAGGTTTGTGCTATGAAGTTTAATGTCCTTGTGACTACTTATGAGTTCATCATGTATGATCGATCAAAGCTTTCAAAAGTCGATTGGAAGTATATCATAATTGATGAAGCACAGAGAATGAAGGATAGGGATTCAGTCCTGGCCCGTGATCTTGATAGATACCGTTGTCAAAGGCGCCTGCTTTTGACAGGAACACCATTACAGAACGATTTGAAGGAACTCTGGTCACTTCTAAATTTACTTCTTCCTGAGGTTTTTGACAATAGGAAAGCCTTCCATGATTGGTTCTCTAAACCATTTCAAAAGGAAGGTCCTGCTCCAACCCAAAATGGGGAGGATGATTGGCTCGAGACTGAGAAGAAAGTTATCATTATCCACCGACTTCATCAGATTCTTGAGCCTTTCATGCTCAGGCGTCGTGTTGAAGATGTTGAAGGCTCACTTCCACCTAAGGTCTCGATAGTTCTAAAATGCAAAATGTCCGCTGTTCAAAGTGCAATTTATGATTGGGTCAAATCAACTGGTACCCTTCGTCTTGATCCTGAGGATGAGAAGCGTAGGGTTCTAAAGAATCCGGTCTACCAGGTGAAGCAATATAAAACTTTAAACAACAGATGCATGGAGCTCCGCAAAACTTGCAATCATCCGTTGCTTAATTATCCCTTCTTCAATGACTTATCTAAAGATTTCCTTGTAAAGTCTTGTGGAAAATTGTGGATCCTGGATAGAATTCTCATTAAACTTCAAAGAACAGGACATCGTGTTCTACTGTTTAGTACCATGACAAAACTCCTAGACATCTTGGAAGAATACCTGCAATGGCGAAGACTTGTGTACAGAAGAATTGATGGTACAACCAGTTTGGAAGATCGTGAGTCGGCTATAGTTGACTTCAATAGCCCTGATTCAGATTGCTTCATCTTCTTGCTTAGCATTCGAGCTGCTGGACGAGGTCTGAACCTTCAGTCTGCTGATACAGTTGTTATATATGATCCTGATCCGAACCCTAAAAATGAGGAGCAGGCTGTTGCCCGAGCTCATCGGATTGGACAGAAAAGAGAGGTTAAAGTTATCTATATGGAAGCCGTTGTTGACAAGATCGCTAGCCATCAGAAGGAGGATGAAATGAGAAGTGGAGGCACTGTTGACATGGAGGATGAACTTGCAGGTAAGGATCGCTACATAGGATCTATTGAGAGCCTCATAAGGAACAATATTCAACAATATAAGATAGATATGGCTGATGAGGTTATTAATGCTGGACGCTTTGATCAAAGAACAACACATGAAGAGAGGCGTTTGACACTTGAGACATTATTGCATGATGAAGAGAGGTATCAAGAAACTGTCCATGACGTTCCATCATTGCAGGAGGTAAATCGAATGATTGCCAGGAGCGAAGAGGAAGTGGAACTGTTTGATCAAATGGATGAAGAGGAGGATTGGATTGAGGAGATGACAAGGTTTGATCAAGTACCCAAGTGGCTTCGAGCCAATACAAGGGAGGTGAATGCTGCTGTTGCTGCGCTGTCAAAAAGACCGTCAAAGAACATTTTAACTGGTGGTACAATACCTGTGGAACCTGGTGAAGAAAGGAAAAGAGGACGGCCCAAGGGGAAAAAGCATCTAAGTTACAAAGAAGTAGATGATGAGAATGGAGAGTACTCCGAAGCAAGCTCTGATGAAAGAAATGGATATGCACATGAAGAAGGTGAAATAGGAGAATTTGAAGACGATGGGTATAGTGGTCCTGATGGACCTCAACCCATCGATAAAGATCAGTTGGAAGATGGTATACTTTGCGAGGCTGCCGGTTATGCATTTCCTAGATCTTTGGAAAGTGCTGGAAATAATCAGATGGTTGAAGAGGCTGGTTCCTCAGGATCATCCTCAGACAGTCAAAGATTGATCCAGACGGTATCTCCATCAGTTTCCTCTCAGAAATTTGGTTCACTTTCTGCACTAGATGCCAGGCCAAGTTCGATACCAAGAAAGATGACAGATGAGTTGGAAGAAGGGGAAATTGCTGTTTCTGGTGATTCTCACATGGATCATCAACAGTCTGGCAGTTGGATTCATGATCGTGATGAAGGTGAGGATGAACAAGTTTTGCAGCAACCCAAGATTAAACGTAAACGTAGCATGCGTGTTCGACCCCGTCCTGTTGCTGATAAACATGAAGAAAAGCCTGTCAATGAAATGGCATCTCATTTAGCAATACAAGCAGAACATAAATATCAATCACAGCCAATGGCCGACATAGAATCAAAACGATTGGTTGAATCCAAACCAGGCAGGCATGATTTAAATGCATCATTAAAAAATAAGCGAAGTTTACCTCAAAGGAGAACCATCAATTCAAGTGGATCTTCGGCTCATGGCACTAAAATGACCGAAATCATCCAGAGAAGGTGCAAAAATGTAATTAGCAAGCTACAAAGGCGAATAGACAAGGAAGGTCAACAAATTGTGCCCTTGTTAACAGATTTGTGGAAGAGAATTGAGAATTCTGGGTACAGTAGTGGATCCGGGAACAGCCTGTTGGATTTAAGAAAGATTGACCAGCGGATTGATAGATTGGAGTATAATGGAGCAACAGAGCTTGTATTTGATGTGCAGTTCATGCTAAAGAGCGCAATGCAATTTTACGGCTTTTCGCATGAGGTAAGAACTGAAGCGAGGAAGGTTCATGATCTATTTTTCGATATCTTGAAAATCGCATTTCCTGATACGGACTTCCGAGATGCAAGAAGTGCGCTTTCTTTCGCCGCCAGTACTGTAACATCCCCAAGGCAAGGAGCTGTTGGTCTAGGCAAGAGGCACCGGCTGATAAATGAGGAATCAAGGGCCGGAAGTGGCAGCACCCGGGAACAGCTTCAGCCGGACGATTATCCAGTGCTGACTCATCCAGGTGAACTTGTGGTTTGCAAGAAGAGAAGGAACGATAGGGGGGAGAAATCATTGGTGAAGCTGAGGACCGGCCCTGTGTCGCCAACTAGCATGGTTCCGGCTATGCGAAGCCCGGGGTCAGGTTCGACTCCTAGGGATGCTAGACTAGCGCATCAGTCTCCTCATGCACAAGGGTTGGTTGGCCAGCCATTTCAGCAGCCAAACGGCTCCGGTGGTTCGGTTGGTTGGGCAAACCCCGTAAAGCGACTACGGACGGATTCTGGGAAGAGGAGACCAAGCCATATGTAG 6501 0.4509 MQSGGGGRNPGVGRTGSTATSSAAASPSSSSSASQLGLDQHHLQQQQQQQQQQQISSSRQSFQQQLLRKPEGNEAFLAYQAGLQGAFGNNNFSSPGAMQLPQQSRKFMELAQHGASQDGQFRAQGVEQQMMNPMHQAYLQYALAQQKSAMGIQSQQQAKMGMLNPSLKDQEMRVANLKMQEMMAMQAMHQAQGSSSRNSSEHVSRGEKQIEPGPQTAPDQKTEGKPLSQGPAIGHVMPGNVVRPMHVPESQQGIQNFMAMSAQYQAMQAWARERNIDLSHPANANIMSQLIPMMQARMASQQKVNESNVGVQSTPVPVSRQQVTSPAVGSEGSAHANSSSEASGQSGSSKARQSVPPGHFGSTTNSGIGSGSSDMVMQQLGAQGRESPASLRQPVSVGNGMPSVHPHQSSANRNSGAEHPMGAKTSSSGSEPPQMQNLRQLNQSSSQAGVPTNEGGSGSHAKSQTAPPAQMPQHRTGSVFTKQQLHVLKAQILAFRRLKKGEGTLPQELLRAIAPPPLEMQVQHSNHPTGGQNQDKPSGSIAAEQPRHTEPNAKDSQSIPAINGQSSLKQEPFPREEKSVVPPVPVQAVMPPAPKESAPTLSAGKEEQKSVACPDKSDQDRDSDRGKNRTPPRNDLVLDRGKAVAPQASVSDSTQIKKSAQTSTVSQPKDAASTRKYCGPLFDFPSFTRKHDSFGSSMMVNNNNNLSLAYDVKDLLLEEGMEVLNKKRTENLKKIEGLLAVNLERKRIRPDLVLRLQIEEKKLRLVDLQARLRDEIDQQQQEIMAMPDRPYRKFVRLCERQRMELARQVQASQRALREKQLKSIFQWRKKLLETHWAIRDARTARNRGVGKYHERMMREFSKRKDDDRNKRMEALKNNDVDRYREMLLEQQTSMPGDAAERYAVLSTFLSQTEEYLHKLGSKITAAKNQQEVEEAAKSAAAAARLQGLSEEEVRAAAACAGEEVMIRNRFLEMNAPRDSSSVNKYYNLAHAVSETVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSEFYNWLPSVSCIFYVGSKDQRSKLFSQEVCAMKFNVLVTTYEFIMYDRSKLSKVDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEGPAPTQNGEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLKCKMSAVQSAIYDWVKSTGTLRLDPEDEKRRVLKNPVYQVKQYKTLNNRCMELRKTCNHPLLNYPFFNDLSKDFLVKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVDKIASHQKEDEMRSGGTVDMEDELAGKDRYIGSIESLIRNNIQQYKIDMADEVINAGRFDQRTTHEERRLTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEEVELFDQMDEEEDWIEEMTRFDQVPKWLRANTREVNAAVAALSKRPSKNILTGGTIPVEPGEERKRGRPKGKKHLSYKEVDDENGEYSEASSDERNGYAHEEGEIGEFEDDGYSGPDGPQPIDKDQLEDGILCEAAGYAFPRSLESAGNNQMVEEAGSSGSSSDSQRLIQTVSPSVSSQKFGSLSALDARPSSIPRKMTDELEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQQPKIKRKRSMRVRPRPVADKHEEKPVNEMASHLAIQAEHKYQSQPMADIESKRLVESKPGRHDLNASLKNKRSLPQRRTINSSGSSAHGTKMTEIIQRRCKNVISKLQRRIDKEGQQIVPLLTDLWKRIENSGYSSGSGNSLLDLRKIDQRIDRLEYNGATELVFDVQFMLKSAMQFYGFSHEVRTEARKVHDLFFDILKIAFPDTDFRDARSALSFAASTVTSPRQGAVGLGKRHRLINEESRAGSGSTREQLQPDDYPVLTHPGELVVCKKRRNDRGEKSLVKLRTGPVSPTSMVPAMRSPGSGSTPRDARLAHQSPHAQGLVGQPFQQPNGSGGSVGWANPVKRLRTDSGKRRPSHM 2166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00085 2166 Coils Coil 1557 1577 - -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 1617 1668 - -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 2129 2144 - -
Aip02g00085 2166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1244 1581 IPR027417 -
Aip02g00085 2166 SMART QLQ_2 478 515 IPR014978 GO:0005524|GO:0005634|GO:0006355
Aip02g00085 2166 Gene3D - 999 1249 IPR038718 -
Aip02g00085 2166 SMART bromo_6 1895 2010 IPR001487 GO:0005515
Aip02g00085 2166 MobiDBLite consensus disorder prediction 186 239 - -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 1722 1755 - -
Aip02g00085 2166 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1020 1185 IPR014001 -
Aip02g00085 2166 SUPERFAMILY Bromodomain 1936 2008 IPR036427 GO:0005515
Aip02g00085 2166 Gene3D - 1250 1460 IPR027417 -
Aip02g00085 2166 PANTHER SNF2/RAD54 HELICASE FAMILY 33 2087 - -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 298 476 - -
Aip02g00085 2166 CDD SF2_C_SNF 1336 1461 - -
Aip02g00085 2166 SMART ultradead3 1004 1193 IPR014001 -
Aip02g00085 2166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1240 IPR027417 -
Aip02g00085 2166 Coils Coil 802 822 - -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 13 66 - -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 1788 1809 - -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 1722 1766 - -
Aip02g00085 2166 Pfam QLQ 480 513 IPR014978 GO:0005524|GO:0005634|GO:0006355
Aip02g00085 2166 MobiDBLite consensus disorder prediction 1 66 - -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 1643 1668 - -
Aip02g00085 2166 Gene3D - 1896 2026 IPR036427 GO:0005515
Aip02g00085 2166 MobiDBLite consensus disorder prediction 2048 2067 - -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 521 672 - -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 609 636 - -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 2093 2166 - -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 1675 1694 - -
Aip02g00085 2166 Coils Coil 758 782 - -
Aip02g00085 2166 Pfam SNF2-related domain 1011 1317 IPR000330 GO:0005524|GO:0140658
Aip02g00085 2166 MobiDBLite consensus disorder prediction 1864 1895 - -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 552 570 - -
Aip02g00085 2166 ProSiteProfiles QLQ domain profile. 479 515 IPR014978 GO:0005524|GO:0005634|GO:0006355
Aip02g00085 2166 Pfam Helicase conserved C-terminal domain 1340 1451 IPR001650 -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 1875 1895 - -
Aip02g00085 2166 CDD Bromodomain 1950 2005 - -
Aip02g00085 2166 PANTHER ATP-DEPENDENT HELICASE BRM 33 2087 IPR031056 GO:0006338|GO:0006355|GO:0008094|GO:0040029
Aip02g00085 2166 MobiDBLite consensus disorder prediction 1781 1832 - -
Aip02g00085 2166 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1341 1518 IPR001650 -
Aip02g00085 2166 SMART helicmild6 1367 1451 IPR001650 -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 647 671 - -
Aip02g00085 2166 MobiDBLite consensus disorder prediction 522 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00085 Aip-Chr2 1537262 1547194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00085 1029 1476 RAD5 or RAD16-like Gene Family AT1G02670 26.012 1.77e-29 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip02g00085 SNF2_N 1.1e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00085 - - gmx:100793092 3319.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip02g00085 02 1537262 1547194 Aip02g00085 02 1537262 1547194 ECH
Aip04g02866 04 120014846 120025711 Aip02g00085 02 1537262 1547194 PCT