Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip02g00047 ATGGTTACAACTGGTGGTACTAGCCTGAAAGATGATATCATGCGCTTATATCAACCAGTTCATTTACTAGTTGGGACTCCTGGAAGGATATTAGATCTCGCTAAGAAGGGTGTTTGCGTTCTGAAAGATTGCGCAATGCTTGTTATGGATGAGGCCGATAAGCTTTTGTCCCCAGAATTCCAGCCTTCTATACAGCAGCTGATTCATTTTCTTCCTTCACACCGACAAATTCTGATGTTTTCAGCAACATTTCCTGTTACTGTAAAGGATTTCAAAGATAGGTATCTTCAAAAGCCATATGTCATTAACCTTATGGATGAGCTAACTTTGAAGGGTATCACACAGTATTATGCATTTGTCGAAGAGAGACAGAAGGTTCACTGCCTGAATACACTGTTTTCTAAGTTGCAAATAAACCAGTCAATCATCTTTTGCAATTCGGTGAATCGTGTTGAACTCCTTGCAAAAAAAATCACCGAGCTTGGATATTCGTGTTTCTATATTCACGCAAAGATGTTGCAAGATCATCGTAATAGAGTGTTTCATGACTTCCGCAATGGCGCATGCCGTAATCTTGTTTGTACTGATCTTTTTACTAGGGGAATAGACATTCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATCTCCACAGGGTCGGTCGCTCAGGGAGGTTTGGGCATCTTGGTTTAGCAGTTAACTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAACAAGAACTTGGAACTGAAATAAAGCAAATTCCACCACATATTGACCAGGCAATTTATTGCCGGTGA 828 0.3913 MVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDEADKLLSPEFQPSIQQLIHFLPSHRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip02g00047 275 Pfam Helicase conserved C-terminal domain 127 233 IPR001650 -
Aip02g00047 275 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 102 IPR014001 -
Aip02g00047 275 CDD SF2_C_DEAD 113 242 - -
Aip02g00047 275 Gene3D - 1 109 IPR027417 -
Aip02g00047 275 SMART helicmild6 152 233 IPR001650 -
Aip02g00047 275 Pfam DEAD/DEAH box helicase 3 90 IPR011545 GO:0003676|GO:0005524
Aip02g00047 275 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 275 - -
Aip02g00047 275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 255 IPR027417 -
Aip02g00047 275 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 112 272 IPR001650 -
Aip02g00047 275 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 12 1 275 - -
Aip02g00047 275 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 48 56 IPR000629 -
Aip02g00047 275 Gene3D - 110 275 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip02g00047 Aip-Chr2 1170603 1172260 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip02g00047 5 268 Eukaryotic Initiation Factors Gene Family AT1G72730 39.850 2.52e-65 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip02g00047 K12614 - cpap:110819449 550.051